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Passing a negative step in a slice to select a non-chunked zarr-backed datasets raises an error.
What did you expect to happen?
zarr should allow negative step (probably?)
Minimal Complete Verifiable Example
importxarrayasxr# create a zarr datasetair=xr.tutorial.open_dataset("air_temperature")
air.to_zarr("test.zarr")
ds=xr.open_dataset("test.zarr", engine="zarr")
ds.air[::-1, ].load()
# note that this works if the dataset is backed by daskds_dask=xr.open_dataset("test.zarr", engine="zarr", chunks="auto")
ds_dask.air[::-1, ].load()
MVCE confirmation
Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
Complete example — the example is self-contained, including all data and the text of any traceback.
Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
New issue — a search of GitHub Issues suggests this is not a duplicate.
Relevant log output
File~/code/xarray/xarray/core/parallelcompat.py:93, inguess_chunkmanager(manager)
91ifisinstance(manager, str):
92ifmanagernotinchunkmanagers:
--->93raiseValueError(
94f"unrecognized chunk manager {manager} - must be one of: {list(chunkmanagers)}"95 )
97returnchunkmanagers[manager]
98elifisinstance(manager, ChunkManagerEntrypoint):
99# already a valid ChunkManager so just pass throughValueError: unrecognizedchunkmanagerdask-mustbeoneof: []
What happened?
As per: #8246 (comment)
Passing a negative step in a
slice
to select a non-chunked zarr-backed datasets raises an error.What did you expect to happen?
zarr should allow negative step (probably?)
Minimal Complete Verifiable Example
MVCE confirmation
Relevant log output
Anything else we need to know?
The error comes from https://github.com/zarr-developers/zarr-python/blob/6ec746ef1242dd9fec26b128cc0b3455d28ad6f0/zarr/indexing.py#L174 so it would need an upstream fix first.
cc @dcherian is this what you had in mind?
Environment
INSTALLED VERSIONS
commit: f6d69a1
python: 3.10.12 | packaged by conda-forge | (main, Jun 23 2023, 22:40:32) [GCC 12.3.0]
python-bits: 64
OS: Linux
OS-release: 6.2.0-33-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.14.2
libnetcdf: 4.9.2
xarray: 2023.9.1.dev8+gf6d69a1f
pandas: 2.1.1
numpy: 1.24.4
scipy: 1.11.3
netCDF4: 1.6.4
pydap: installed
h5netcdf: 1.2.0
h5py: 3.9.0
Nio: None
zarr: 2.16.1
cftime: 1.6.2
nc_time_axis: 1.4.1
PseudoNetCDF: 3.2.2
iris: 3.7.0
bottleneck: 1.3.7
dask: 2023.9.2
distributed: None
matplotlib: 3.8.0
cartopy: 0.22.0
seaborn: 0.12.2
numbagg: 0.2.2
fsspec: 2023.9.2
cupy: None
pint: 0.20.1
sparse: 0.14.0
flox: 0.7.2
numpy_groupies: 0.10.1
setuptools: 68.2.2
pip: 23.2.1
conda: None
pytest: 7.4.2
mypy: None
IPython: 8.15.0
sphinx: None
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