Add documentation for the GFF3 reader#221
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kianfar77 merged 7 commits intoprojectglow:masterfrom May 29, 2020
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## master #221 +/- ##
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Coverage 93.59% 93.59%
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Files 88 88
Lines 4232 4232
Branches 359 359
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Hits 3961 3961
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Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com>
Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com>
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* doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com>
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* Support numpy literals (#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * Comments Signed-off-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com>
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* doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com>
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* doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com>
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* Support numpy literals (projectglow#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (projectglow#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * Comments Signed-off-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com>
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* Support numpy literals (#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * new rule Signed-off-by: Henry D <henrydavidge@gmail.com> * Support numpy literals (#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * add tests Signed-off-by: Henry D <henrydavidge@gmail.com> * style Signed-off-by: Henry D <henrydavidge@gmail.com> * Fix IntelliJ import (#223) * Support numpy literals (#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * Comments Signed-off-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com> * comments Signed-off-by: Henry D <henrydavidge@gmail.com> * more docs Signed-off-by: Henry D <henrydavidge@gmail.com> * note pr Signed-off-by: Henry D <henrydavidge@gmail.com> Co-authored-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com>
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* doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Henry Davidge <hhd@databricks.com>
henrydavidge
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Jun 22, 2020
* Support numpy literals (projectglow#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (projectglow#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * Comments Signed-off-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com> Signed-off-by: Henry Davidge <hhd@databricks.com>
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* Support numpy literals (projectglow#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (projectglow#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * new rule Signed-off-by: Henry D <henrydavidge@gmail.com> * Support numpy literals (projectglow#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (projectglow#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * add tests Signed-off-by: Henry D <henrydavidge@gmail.com> * style Signed-off-by: Henry D <henrydavidge@gmail.com> * Fix IntelliJ import (projectglow#223) * Support numpy literals (projectglow#213) * WIP Signed-off-by: Karen Feng <karen.feng@databricks.com> * Ndarray Signed-off-by: Karen Feng <karen.feng@databricks.com> * More tests Signed-off-by: Karen Feng <karen.feng@databricks.com> * Support flat array Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move registering Signed-off-by: Karen Feng <karen.feng@databricks.com> * pytest Signed-off-by: Karen Feng <karen.feng@databricks.com> * Make docstring more accurate Signed-off-by: Karen Feng <karen.feng@databricks.com> * idempotent registration Signed-off-by: Karen Feng <karen.feng@databricks.com> * Test fixup Signed-off-by: Karen Feng <karen.feng@databricks.com> * Move import out Signed-off-by: Karen Feng <karen.feng@databricks.com> * Add documentation for the GFF3 reader (projectglow#221) * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * doc Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * notebook Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * attributes Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> * yapf Signed-off-by: kianfar77 <kiavash.kianfar@databricks.com> Signed-off-by: Karen Feng <karen.feng@databricks.com> * Remove cross-build plugin Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap Signed-off-by: Karen Feng <karen.feng@databricks.com> * triple quote Signed-off-by: Karen Feng <karen.feng@databricks.com> * set 'for imports' and 'for builds' within sbt settings Signed-off-by: Karen Feng <karen.feng@databricks.com> * CircleCI config Signed-off-by: Karen Feng <karen.feng@databricks.com> * wrap release Signed-off-by: Karen Feng <karen.feng@databricks.com> * More docs Signed-off-by: Karen Feng <karen.feng@databricks.com> * Comments Signed-off-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com> * comments Signed-off-by: Henry D <henrydavidge@gmail.com> * more docs Signed-off-by: Henry D <henrydavidge@gmail.com> * note pr Signed-off-by: Henry D <henrydavidge@gmail.com> Co-authored-by: Karen Feng <karen.feng@databricks.com> Co-authored-by: Kiavash Kianfar <kiavash.kianfar@databricks.com> Signed-off-by: Henry Davidge <hhd@databricks.com>
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What changes are proposed in this pull request?
This PR adds documentation for the GFF3 reader along with an example notebook.
How is this patch tested?
(Details)