Update github workflows

.github/workflows/ci.yml

@@ -0,0 +1,81 @@
+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: write
+
+jobs:
+  test-and-publish:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install poetry
+      run: make setup
+
+    - name: Set up cache
+      uses: actions/cache@v3
+      with:
+        path: .venv
+        key: venv-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}
+
+    - name: Install dependencies
+      run: |
+        poetry config virtualenvs.in-project true
+        poetry install
+
+    - name: Run safety checks
+      run: |
+        poetry install --with safety
+        make check-safety
+
+    - name: Run style checks
+      continue-on-error: true
+      run: |
+        poetry install --with style
+        make check-codestyle
+
+    - name: Run tests
+      run: |
+        poetry install --with tests
+        make test
+  
+    - name: Run coverage
+      run: |
+        poetry install --with tests
+        make coverage
+
+    # Only run publishing steps on main branch and Python 3.11
+    - name: Version and Publish
+      if: github.ref == 'refs/heads/main' && matrix.python-version == '3.11'
+      run: |
+        poetry self add poeblix@latest
+        poetry version prerelease
+        
+        git config --local user.email "[email protected]"
+        git config --local user.name "GitHub Action"
+        git add .
+        git commit -m "Bump version" || echo "No changes to commit"
+        git push
+
+        poetry blixbuild --only-lock
+        
+    - name: Publish to PyPI
+      if: github.ref == 'refs/heads/main' && matrix.python-version == '3.9'
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        password: ${{ secrets.PYPI_TOKEN }}

Makefile

@@ -1,127 +1,71 @@
-#* Variables
+### Variables
+# Define shell and Python environment variables
 SHELL := /usr/bin/env bash
 PYTHON := python
 PYTHONPATH := `pwd`
-#* Docker variables
-IMAGE := lighter
-VERSION := latest
 
-
-#* Poetry
-
-#* Fix for issue with poetry
+### Poetry Setup
+# Install Poetry and configure environment
 .PHONY: setup
-setup: poetry-download
-	@echo export PYTHON_KEYRING_BACKEND=keyring.backends.null.Keyring >> ~/.bashrc 
-	@echo export PYTHON_KEYRING_BACKEND=keyring.backends.null.Keyring >> ~/.profile
-	source ~/.bashrc
-	source ~/.profile
-	poetry self add poetry-bumpversion@latest
-	poetry self add poetry-plugin-export@latest
-
-
-.PHONY: poetry-download
-poetry-download:
+setup:
 	curl -sSL https://install.python-poetry.org | $(PYTHON) -
+	@echo "export PYTHON_KEYRING_BACKEND=keyring.backends.null.Keyring" >> ~/.bashrc 
+	@echo "export PYTHON_KEYRING_BACKEND=keyring.backends.null.Keyring" >> ~/.profile
+	poetry self add poetry-bumpversion@latest poetry-plugin-export@latest
 
-.PHONY: poetry-remove
-poetry-remove:
-	curl -sSL https://install.python-poetry.org | $(PYTHON) - --uninstall
-
-#* Installation
+### Installation
+# Install project dependencies
 .PHONY: install
 install:
 	poetry install -n
 
+# Install pre-commit hooks
 .PHONY: pre-commit-install
 pre-commit-install:
 	poetry run pre-commit install
 
-#* Formatters
-.PHONY: codestyle
-codestyle:
-	poetry run pyupgrade --exit-zero-even-if-changed --py37-plus **/*.py
-	poetry run isort --settings-path pyproject.toml ./
-	poetry run black --config pyproject.toml ./
-
-.PHONY: formatting
-formatting: codestyle
-
-#* Linting
-.PHONY: test
-test:
-	PYTHONPATH=$(PYTHONPATH) poetry run pytest -c pyproject.toml --cov-report=html --cov=lighter tests/
-	poetry run coverage-badge -o assets/images/coverage.svg -f
-
+### Linting & Testing
+# Check code formatting and style
 .PHONY: check-codestyle
 check-codestyle:
 	poetry run isort --diff --check-only --settings-path pyproject.toml ./
 	poetry run black --diff --check --config pyproject.toml ./
 	poetry run pylint lighter
 
-.PHONY: mypy
-mypy:
-	poetry run mypy --config-file pyproject.toml ./
-
+# Run security checks
 .PHONY: check-safety
 check-safety:
 	poetry check
 	poetry export | poetry run safety check --stdin
 	poetry run bandit -ll --recursive lighter tests
 
-.PHONY: lint
-lint: test check-codestyle mypy check-safety
+# Run tests with coverage report
+.PHONY: test
+test:
+	PYTHONPATH=$(PYTHONPATH) poetry run pytest -c pyproject.toml --cov-report=html --cov=lighter tests/
+
+# Generate coverage badge
+.PHONY: coverage
+coverage:
+	poetry run coverage-badge -o assets/images/coverage.svg -f
 
+### Dependency Management
+# Update development dependencies
 .PHONY: update-dev-deps
 update-dev-deps:
-	poetry add -G dev bandit@latest "isort[colors]@latest" mypy@latest pre-commit@latest pydocstyle@latest pylint@latest pytest@latest pyupgrade@latest safety@latest coverage@latest coverage-badge@latest pytest-html@latest pytest-cov@latest
+	poetry add -G dev bandit@latest "isort[colors]@latest" mypy@latest pre-commit@latest pydocstyle@latest \
+		pylint@latest pytest@latest pyupgrade@latest safety@latest coverage@latest coverage-badge@latest \
+		pytest-html@latest pytest-cov@latest
 	poetry add -G dev --allow-prereleases black@latest
 
-#* Docker
-# Example: make docker-build VERSION=latest
-# Example: make docker-build IMAGE=some_name VERSION=0.0.1
-.PHONY: docker-build
-docker-build:
-	@echo Building docker $(IMAGE):$(VERSION) ...
-	docker build \
-		-t $(IMAGE):$(VERSION) . \
-		-f ./docker/Dockerfile --no-cache
-
-# Example: make docker-remove VERSION=latest
-# Example: make docker-remove IMAGE=some_name VERSION=0.0.1
-.PHONY: docker-remove
-docker-remove:
-	@echo Removing docker $(IMAGE):$(VERSION) ...
-	docker rmi -f $(IMAGE):$(VERSION)
-
-#* Cleaning
-.PHONY: pycache-remove
-pycache-remove:
-	find . | grep -E "(__pycache__|\.pyc|\.pyo$$)" | xargs rm -rf
+# Update main project dependencies
+.PHONY: update-deps
+update-deps:
+	poetry add torch@latest torchvision@latest pytorch_lightning@latest torchmetrics@latest monai@latest
 
-.PHONY: dsstore-remove
-dsstore-remove:
-	find . | grep -E ".DS_Store" | xargs rm -rf
-
-.PHONY: mypycache-remove
-mypycache-remove:
-	find . | grep -E ".mypy_cache" | xargs rm -rf
-
-.PHONY: ipynbcheckpoints-remove
-ipynbcheckpoints-remove:
-	find . | grep -E ".ipynb_checkpoints" | xargs rm -rf
-
-.PHONY: pytestcache-remove
-pytestcache-remove:
-	find . | grep -E ".pytest_cache" | xargs rm -rf
-
-.PHONY: build-remove
-build-remove:
+### Cleaning
+# Remove temporary files and build artifacts
+.PHONY: clean
+clean:
+	find . | grep -E "(__pycache__|\.pyc|\.pyo$|.DS_Store|.mypy_cache|.pytest_cache|.ipynb_checkpoints)" | xargs rm -rf
 	rm -rf build/
-
-.PHONY: cleanup
-cleanup: pycache-remove dsstore-remove mypycache-remove ipynbcheckpoints-remove pytestcache-remove
-
-.PHONY: get-latest-deps
-get-latest-deps: 
-	poetry add torch@latest torchvision@latest pytorch_lightning@latest torchmetrics@latest monai@latest