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@populationgenomics

Centre for Population Genomics

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  1. production-pipelines production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    Python 7 1

  2. cpg-cost-control cpg-cost-control Public

    A Cloud Function to handle GCP billing budget notifications.

    Python 6 3

  3. talos talos Public

    Rare Disease variant reanalysis tool

    Python 6 4

  4. cuKING cuKING Public

    CUDA-based KING relatedness estimation

    Cuda 5

  5. seqr seqr Public

    Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics

    Python 3 1

  6. cpg-infrastructure cpg-infrastructure Public

    This repository is used to manage the infrastructure at the CPG

    Python 3 1

Repositories

Showing 10 of 71 repositories
  • rare-disease Public

    A collection of scripts relating to rare-disease specific projects

    populationgenomics/rare-disease’s past year of commit activity
    Python 2 MIT 1 0 2 Updated Jan 31, 2025
  • production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    populationgenomics/production-pipelines’s past year of commit activity
    Python 7 MIT 1 45 (1 issue needs help) 35 Updated Jan 31, 2025
  • hail Public Forked from hail-is/hail

    Scalable genomic data analysis.

    populationgenomics/hail’s past year of commit activity
    Python 1 MIT 251 3 1 Updated Jan 30, 2025
  • metamist Public

    Sample level metadata system

    populationgenomics/metamist’s past year of commit activity
    Python 2 MIT 1 43 21 Updated Jan 30, 2025
  • cpg-flow Public

    CPG Pipeline Python API

    populationgenomics/cpg-flow’s past year of commit activity
    Python 0 MIT 0 3 3 Updated Jan 30, 2025
  • talos Public

    Rare Disease variant reanalysis tool

    populationgenomics/talos’s past year of commit activity
    Python 6 MIT 4 14 4 Updated Jan 29, 2025
  • talos-azure-deploy Public
    populationgenomics/talos-azure-deploy’s past year of commit activity
    Shell 2 MIT 0 0 0 Updated Jan 29, 2025
  • talos_manuscript Public
    populationgenomics/talos_manuscript’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Jan 28, 2025
  • ClinvArbitration Public

    A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG

    populationgenomics/ClinvArbitration’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Jan 23, 2025
  • test_workflows_shared Public template
    populationgenomics/test_workflows_shared’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jan 22, 2025
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