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Deploy pharmr

Deploy pharmr #22

Workflow file for this run

on:
workflow_dispatch:
workflow_call:
name: Deploy pharmr
jobs:
deploy:
runs-on: ubuntu-20.04
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Checkout pharmr
uses: actions/checkout@v3
with:
path: pharmr_repo
- uses: ./.github/actions/check-pharmr
with:
as-release: true
- name: Switch branch (remove when in main)
run:
git switch use-composite-actions
- with:
path: pharmr_repo
run:

Check failure on line 31 in .github/workflows/deploy.yaml

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The workflow is not valid. .github/workflows/deploy.yaml (Line: 31, Col: 9): Unexpected value 'run' .github/workflows/deploy.yaml (Line: 29, Col: 9): Required property is missing: uses
git status
# - name: Set up git config
# working-directory: pharmr_repo
# run: |
# git config --local user.name "github-actions[bot]"
# git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
#
# - name: Add changes to DESCRIPTION and documentation
# working-directory: pharmr_repo
# run: |
# git add DESCRIPTION
# git add NAMESPACE
# git add R/functions_wrapper.R
# git add man/
# git status
#
# - name: Check if any files have been staged
# working-directory: pharmr_repo
# run: |
# if [[ "$(git diff --name-only --cached | wc -c)" != "0" ]]; then
# echo "has_been_updated=true" >> $GITHUB_ENV
# else
# echo "has_been_updated=false" >> $GITHUB_ENV
# fi
#
# - name: Commit and push changes, tag version
# if: ${{ env.has_been_updated == 'true' }}
# working-directory: pharmr_repo
# run: |
# echo "Committing changes"
# git commit -m "Update DESCRIPTION/documentation"
# echo "Tag version"
# git tag "${{ needs.check-pharmr.outputs.pharmpy_version }}"
# echo "Push changes"
# git push https://$USERNAME:[email protected]/pharmpy/pharmr.git
# echo "push tags"
# git push --tags https://$USERNAME:[email protected]/pharmpy/pharmr.git
# env:
# REPO_KEY: ${{secrets.ACCESS_TOKEN}}
# USERNAME: github-actions[bot]