Install promises as deploy dependency #292
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - devel | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| workflow_dispatch: | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-2022, r: 'release'} | |
| - {os: macOS-12, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout pharmr | |
| uses: actions/checkout@v3 | |
| with: | |
| path: pharmr_repo | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| working-directory: pharmr_repo | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.11" | |
| - name: Restore R package cache | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| working-directory: pharmr_repo | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| sudo apt install libcurl4-openssl-dev | |
| - name: Install png (temporary) | |
| working-directory: pharmr_repo | |
| if: runner.os == 'Windows' | |
| run: | | |
| install.packages('png', repos='https://mran.microsoft.com/snapshot/2022-11-27') | |
| shell: Rscript {0} | |
| - name: Install R dependencies | |
| working-directory: pharmr_repo | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| install.packages('reticulate') | |
| shell: Rscript {0} | |
| - name: Install pharmr | |
| working-directory: pharmr_repo | |
| run: | | |
| remotes::install_local(force=TRUE) | |
| shell: Rscript {0} | |
| - name: Install miniconda | |
| run: | | |
| Sys.setenv(RETICULATE_MINICONDA_PYTHON_VERSION="3.9") | |
| reticulate::install_miniconda() | |
| shell: Rscript {0} | |
| - name: Install Pharmpy | |
| run: | | |
| pharmr::install_pharmpy() | |
| shell: Rscript {0} | |
| - name: Check (as cran) | |
| working-directory: pharmr_repo | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results-cran | |
| path: check | |
| - name: Check (to run python) | |
| working-directory: pharmr_repo | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |