Deploy pharmr #47
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| on: | |
| workflow_dispatch: | |
| workflow_call: | |
| name: Deploy pharmr | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout pharmr | |
| uses: actions/checkout@v4 | |
| with: | |
| path: pharmr_repo | |
| - uses: ./pharmr_repo/.github/actions/setup-dependencies | |
| - uses: ./pharmr_repo/.github/actions/setup-pharmr | |
| with: | |
| as-release: true | |
| - uses: ./pharmr_repo/.github/actions/check-pharmr | |
| - name: Get Pharmpy version | |
| working-directory: pharmpy_repo | |
| run: | | |
| echo "pharmpy_version=`git describe --tags`" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Set up git config | |
| working-directory: pharmr_repo | |
| run: | | |
| git config --local user.name "github-actions[bot]" | |
| git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| - name: Add changes to DESCRIPTION and documentation | |
| working-directory: pharmr_repo | |
| run: | | |
| git add DESCRIPTION | |
| git add NAMESPACE | |
| git add R/functions_wrapper.R | |
| git add man/ | |
| git status | |
| - name: Check if any files have been staged | |
| working-directory: pharmr_repo | |
| run: | | |
| if [[ "$(git diff --name-only --cached | wc -c)" != "0" ]]; then | |
| echo "has_been_updated=true" >> $GITHUB_ENV | |
| else | |
| echo "has_been_updated=false" >> $GITHUB_ENV | |
| fi | |
| - name: Commit and push changes, tag version | |
| if: ${{ env.has_been_updated == 'true' }} | |
| working-directory: pharmr_repo | |
| run: | | |
| echo "Committing changes" | |
| git commit -m "Update DESCRIPTION/documentation" | |
| echo "Tag version" | |
| git tag "${{ env.pharmpy_version }}" | |
| echo "Push changes" | |
| git push https://$USERNAME:[email protected]/pharmpy/pharmr.git | |
| echo "push tags" | |
| git push --tags https://$USERNAME:[email protected]/pharmpy/pharmr.git | |
| env: | |
| REPO_KEY: ${{secrets.ACCESS_TOKEN}} | |
| USERNAME: github-actions[bot] |