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estimate growth parameters consistently #57

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kellijohnson-NOAA opened this issue Oct 13, 2021 · 1 comment
Open
3 of 5 tasks

estimate growth parameters consistently #57

kellijohnson-NOAA opened this issue Oct 13, 2021 · 1 comment

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@kellijohnson-NOAA
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kellijohnson-NOAA commented Oct 13, 2021

Problem

There are many ways to estimate growth parameters and it is not consistent between nwfscSurvey and PacFIN.Utilities. Furthermore, parameter estimates are different depending on the parameterization.

I had originally started a new branch to do this, but it moved from the icebox to a broken down unplugged freezer. I plan on

Proposed solution

Implement many ways of estimating growth. Talk to @shcaba and @melissamonk-NOAA because they both do this independently of the packages. Maybe even @ChristineStawitz-NOAA.

  • nwfscSurvey::PlotVarLengthAtAge.fn() parameterized in terms of L0 and not t0, @melissamonk-NOAA has ideas
  • not sure about the lack of log(pars) in nwfscSurvey version
  • bells and whistles can be added to nwfscSurvey::PlotVarLengthAtAge.fn(); clear labels for axes; alternative text
@chantelwetzel-noaa
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An approach for estimating growth in terms of L0 has been created within the new est_growth function. This function works similar to the approach in the {PacFIN.Utilities} package where a predicted length along with a ranged of potential low and high values based on a pre-specified number of standard deviations. The est_growth function calls the same function as the {PacFIN.Utilities} package which is called fit_vbgrowth and is housed in the {nwfscSurvey} package.

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