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  1. OATML/EVE OATML/EVE Public

    Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

    Python 60 54

  2. OATML-Markslab/Tranception OATML-Markslab/Tranception Public

    Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

    Python 138 25

  3. OATML-Markslab/ProteinGym OATML-Markslab/ProteinGym Public

    Official repository for the ProteinGym benchmarks

    HTML 238 25

  4. OATML-Markslab/ProteinNPT OATML-Markslab/ProteinNPT Public

    Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

    Python 81 8

  5. OATML-Markslab/EVEscape OATML-Markslab/EVEscape Public

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    Python 48 9

  6. uncertainty_guided_optimization uncertainty_guided_optimization Public

    Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Miguel Hernández-Lobato, Yarin Gal)

    Python 29 5