Code

AGN Triggering#2

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Merged

pgrete merged 108 commits intomainparthenon-hpc-lab/athenapk:mainfrom forrestglines/cluster_agn_triggeringparthenon-hpc-lab/athenapk:forrestglines/cluster_agn_triggeringCopy head branch name to clipboardMay 18, 2023

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Commits

Commits on Sep 21, 2021

• Added magnetic tower, agn triggering

  

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• Finish rebase by updating input files

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Commits on Oct 18, 2021

• Small changes

  

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Commits on Oct 19, 2021

• Fixed cluster_hydro_agn_feedback python

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• Changed to parthenon/develop

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Commits on Oct 23, 2021

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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Commits on Nov 29, 2021

• Fixed hydro feedback test for Parthenon develop

  

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• Fixed final output in regression tests

  

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Commits on Dec 7, 2021

• Fixed magnetic tower ctest

  

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Commits on Dec 10, 2021

• Zero masking divB when B^2==0

  

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Commits on Dec 13, 2021

• Fixed Cluster restarts

  

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• Cooling table T floor enforced

  

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Commits on Dec 26, 2021

• WIP Adding AGN triggering to history

  

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• Fixed std::max in tabular_cooling

  

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Commits on Jan 10, 2022

• Debugging statements for tabular cooling

  

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Commits on May 16, 2022

• Bug fixes in tabular cooling

  

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• Bug fixes in AGN triggering

  

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• Bug fixes in AGN Feedback

  

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Commits on May 17, 2022

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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Commits on May 19, 2022

• Merge branch 'main' into forrestglines/cluster_agn_triggering

  

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Commits on Jun 1, 2022

• AddParam fixes for upstream changes

  

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Commits on Jun 17, 2022

• Fixed bug in jet precession

  

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• Formatting

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Commits on Jul 19, 2022

• Fixed AGN Triggering Mode in history dumps

  

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• Removed DEBUGGING statements

  

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Commits on Oct 10, 2022

• Fixed unyt unit error in testing

  

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Commits on Oct 11, 2022

• Hack for tabular_cooling on DeltaGPUs

  

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Commits on Oct 20, 2022

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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Commits on Nov 15, 2022

• Fixed MPI Reduction error for magnetized AGN jets

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• Merge branch 'main' into forrestglines/cluster_agn_triggering

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• Consolidated EOS ConsToPrim Functions

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• cpp-py-formatter

  

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• Cleanup inputs, move cooling tables

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Commits on Dec 13, 2022

• Cooling table quick-fixes to run sims

  

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Commits on Jan 3, 2023

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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Commits on Jan 4, 2023

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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Commits on Jan 5, 2023

• Merge branch 'forrestglines/cluster_agn_triggering' of github.com:parthenon-hpc-lab/athenapk into forrestglines/cluster_agn_triggering

  

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• Cleaned up cooling cfl hack

  

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Commits on Jan 6, 2023

• Thermal feedback fixes, Bondi fixes

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• WIP docs for Clusters

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Commits on Jan 9, 2023

• Adding equations to cluster docs

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• Fix copyrights for cluster pgen

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• Added Mathews BCG equation

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• Fixed Mathews BCG profile to match reference

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• Added citations to cluster docs

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• Fixing formatting issues in cluster.md

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Commits on Jan 10, 2023

• Added ipython notebook for generating cluster inputs

  

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• Cleaned up cluster notebook

  

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• HACK disable mass injection with thermal feedback

  

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Commits on Jan 26, 2023

• Added optional AGN feedback mass fractions

  

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• Moved gnat-sternberg.cooling

  

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• Fixed Bondi Accretion mass removal

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Commits on Jan 31, 2023

• Comments+Clarifications

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Commits on Feb 1, 2023

• Fixed magnetic tower density bug

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• Added Prim update to AGN Hydro feedback

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• Removed Mathews BCG gravity, added density functions

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Commits on Feb 7, 2023

• Added SNIA Feedback (no docs nor regression tests)

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• Added SNIA feedback to docs and cluster input generator

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• Added optional initial uniform B field

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Commits on Mar 14, 2023

• Add optional dipole magnetic field

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Commits on Mar 28, 2023

• Streamlined cluster_utils mass adding funcs

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• Fixed number of hydro AGN feedback tests

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• Fixed more add mass funcs

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• Clarified HSE r-sampling parameter, removed maxdr

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• Removed AGN triggering reductions from HST

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• Removed defunct comment

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• Avoid implicit casting of sign_jet

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• Removed defunct parameters from notebooks

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• cpp-py-formatter

  

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• Removed defunct use_scratch

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• Merge branch 'main' into forrestglines/cluster_agn_triggering

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• Disable SNIA feedback in cluster tests

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• cpp-py-formatter

  

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Commits on Mar 29, 2023

• Fixed bug in AGN power history output

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• Fixed non-testing of hydro AGN feedback (still broken)

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Commits on Mar 30, 2023

• cpp-py-formatter

  

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• Fixed some coordinate issues in hydro_agn_feedback test

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• Fixed bugs in jet coords, hydro AGN feedback

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• Fixed coordinates in magnetic tower test

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• cpp-py-formatter

  

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Commits on Apr 10, 2023

• Merge remote-tracking branch 'origin/main' into forrestglines/cluster_agn_triggering

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• Cosmetic changes and enabling MPI CI for cluster tests

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• Dont cool below the lower end of the cooling table

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• Use Kokkos reductions

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• Added checks for zero length scales, zero radii

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• Add comment on theta for r=0 edge case in coord trans

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Commits on Apr 12, 2023

• Fix temperature with kinetic feedback

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Commits on Apr 25, 2023

• Added jet temperature and/or velocity

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• Removing triggered gas conserves M,E

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• cpp-py-formatter

  

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• Updated documentation for new jet parameters

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Commits on May 2, 2023

• Fixed compute jet temp from jet velocity

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• Reverted triggering changes

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• Fixed jet temperature and velocity check

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Commits on May 5, 2023

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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• Fix typo

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Commits on May 9, 2023

• Merge branch 'main' into forrestglines/cluster_agn_triggering

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• Update var names

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• Fix outdated magnetic field var names

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Commits on May 15, 2023

• Fixed kinetic jet lower temp check when DEBUG

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• Use mbar_over_kb for kinetic jet temp

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• cpp-py-formatter

  

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• Added header comments to cluster testing inputs

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• Can change device mem in cluster notebook

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• Jupyter notebbok with Precessing jet coord math

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• Fixed AGN accretion to remove gas from entire grid

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• Merge branch 'forrestglines/cluster_agn_triggering' of github.com:parthenon-hpc-lab/athenapk into forrestglines/cluster_agn_triggering

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