Add script for setting up an AMI

scripts/ramp_environment.yml

@@ -0,0 +1,17 @@
+name: ramp
+channels:
+  - conda-forge
+dependencies:
+  - numpy
+  - pyyaml
+  - psycopg2
+  - sqlalchemy
+  - boto3
+  - psutil
+  - cloudpickle
+  - gitpython
+  - pip:
+    - memory_profiler
+    - https://api.github.com/repos/paris-saclay-cds/ramp-backend/zipball/master
+    - https://api.github.com/repos/pythonprofilers/memory_profiler/zipball/master
+

scripts/ubuntu_setup.sh

@@ -0,0 +1,123 @@
+#!/bin/bash
+#
+# Setup a RAMP backend architecture for a given RAMP project
+
+set -e
+
+# Script variables definition
+project_name="$1"
+ramp_dependencies="$2"
+
+RAMPKIT_DIR="$HOME/ramp-kits"
+kit_url="https://github.com/ramp-kits/$project_name"
+kit_dir="$RAMPKIT_DIR/$project_name"
+
+ami_environment="$kit_dir/ami_environment.yml"
+data_dir="$kit_dir/data"
+
+# Text management
+bold=`tput bold`
+normal=`tput sgr0`
+underline=`tput smul`
+
+##############
+# Script help
+##############
+usage()
+{
+  echo "
+  ${bold}Setup a RAMP backend architecture for a given RAMP project${normal}
+
+  Usage:
+
+    ${bold}./ubuntu_setup.sh <ramp_kit_name> <ramp_environment_file>${normal}
+
+    where <ramp_kit_name> stands for the name of the RAMP kit on GitHub
+        ${underline}https://github.com/ramp-kits/<ramp_kit_name>${normal}
+
+    where <ramp_environment_file> is the path to the `ramp_environment.yml`
+        provided with this script
+    "
+}
+
+#######################################################
+# Batch install of latest Miniconda in $HOME directory
+#######################################################
+miniconda_install() {
+  LATEST_MINICONDA="http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh"
+  wget -q $LATEST_MINICONDA -O ~/miniconda.sh
+  bash ~/miniconda.sh -b -p $HOME/miniconda3
+
+  echo 'export PATH="${HOME}/miniconda3/bin:$PATH"' >> ~/.profile
+  source ~/.profile
+
+  conda update --yes --quiet conda
+  pip install --upgrade pip
+}
+
+#################################################################
+# Install Python dependencies in the base conda environment 
+#
+# Argument:
+#   path to a conda environment file (usually 'environment.yml')
+#################################################################
+update_conda_env() {
+    environment_file=$1
+    conda env update --name base --file $environment_file
+}
+
+#############################################################
+# Upgrade the kernal and install conda and RAMP dependencies
+#############################################################
+system_setup() {
+  sudo apt-get update
+  sudo apt-get upgrade --yes
+  miniconda_install
+  update_conda_env $ramp_dependencies
+}
+
+#################################################################
+# Clone the ramp-kit, install dependencies and download the data
+#################################################################
+project_setup() {
+  mkdir $RAMPKIT_DIR
+  git clone $kit_url $kit_dir
+  update_conda_env $ami_environment
+  rm -rf $data_dir && mkdir $data_dir
+  echo
+  echo "${bold}==> Last step is to put the backend data into '$data_dir/'${normal}"
+  echo
+}
+
+
+start_prompt() {
+  echo
+  echo "---------------------------------------------------------------"
+  echo " Starting the setup of the RAMP AMI for $project_name project"
+  echo "---------------------------------------------------------------"
+  echo
+}
+
+end_prompt() {
+  echo
+  echo "---------------------------------------------------------------"
+  echo " Ending the setup of the RAMP AMI for $project_name project"
+  echo "---------------------------------------------------------------"
+  echo
+}
+
+#######
+# Main
+#######
+main() {
+  if [[ "$project_name" == "" || "$project_name" == "help" ]]; then
+    usage
+  else
+    start_prompt
+    system_setup
+    project_setup
+    end_prompt
+  fi
+}
+
+main

setup.py

@@ -47,7 +47,7 @@
             'numpy',
             'pyyaml',
             'sqlalchemy',
-            'psycopg2-binary'],
+            'psycopg2'],
         platforms='any',
         packages=find_packages(),
         entry_points={