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Merged
panll merged 5 commits into from
Jan 22, 2020
Merged

update #1

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2a53299
Point FV3 to the develop branch 26de321 committed 12/4 (#9)
binli2337 Dec 5, 2019
798b8aa
Add cmeps capability (#11)
DeniseWorthen Dec 9, 2019
d3134f0
Change WCOSS acc from FV3GFS-T2O to GFS-DEV (#13)
RatkoVasic-NOAA Dec 17, 2019
478b092
Debug mode capablility (#15)
DeniseWorthen Jan 15, 2020
7c5b4d9
Add debug compilation flag specification at top level (#17)
MinsukJi-NOAA Jan 21, 2020
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2 changes: 1 addition & 1 deletion CICE_SRC
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Submodule CICE_SRC updated 6 files
+10 −2 lanl_cice/bld/Macros.Linux.NEMS.cheyenne
+8 −2 lanl_cice/bld/Macros.Linux.NEMS.hera
+12 −0 lanl_cice/comp_ice.backend
+2 −2 lanl_cice/source/ice_therm_itd.F90
+662 −3 lanl_cice_cap/cice_cap.F90
+1 −1 lanl_cice_cap/makefile.nuopc
2 changes: 1 addition & 1 deletion FV3
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Submodule FV3 updated from ea91f6 to 26de32
2 changes: 1 addition & 1 deletion MOM6
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Submodule MOM6 updated 4 files
+1 −1 clean.sh
+13 −2 compile.sh
+1 −1 src/MOM6
+1 −1 src/mkmf
2 changes: 1 addition & 1 deletion NEMS
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Submodule NEMS updated 7 files
+2 −2 src/incmake/component_CICE.mk
+6 −6 src/incmake/component_MOM6.mk
+1 −1 src/incmake/component_WW3.mk
+19 −0 src/module_EARTH_GRID_COMP.F90
+4 −2 src/module_MEDIATOR.F90
+8 −9 tests/apps.def
+2 −2 tests/rtgen
2 changes: 1 addition & 1 deletion conf/configure.fv3.cheyenne.intel
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Original file line number Diff line number Diff line change
Expand Up @@ -130,7 +130,7 @@ endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv

TRANSCENDENTALS := -fast-transcendentals
FFLAGS_OPENMP = -qopenmp
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2 changes: 1 addition & 1 deletion conf/configure.fv3.hera.intel
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Original file line number Diff line number Diff line change
Expand Up @@ -108,7 +108,7 @@ endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv

TRANSCENDENTALS := -fast-transcendentals
FFLAGS_OPENMP = -qopenmp
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2 changes: 1 addition & 1 deletion conf/configure.fv3_coupled.cheyenne.intel
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Original file line number Diff line number Diff line change
Expand Up @@ -130,7 +130,7 @@ endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv -link_mpi=dbg

TRANSCENDENTALS := -fast-transcendentals
FFLAGS_OPENMP = -qopenmp
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2 changes: 1 addition & 1 deletion conf/configure.fv3_coupled.hera.intel
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Original file line number Diff line number Diff line change
Expand Up @@ -108,7 +108,7 @@ endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv -link_mpi=dbg

TRANSCENDENTALS := -fast-transcendentals
FFLAGS_OPENMP = -qopenmp
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5 changes: 5 additions & 0 deletions coupledFV3_MOM6_CICE_debug.appBuilder
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
# Coupled FV3-MOM6-CICE
#
## NEMS Application Builder file

COMPONENTS=( FMS FV3%DEBUG=Y MOM6%DEBUG=Y CICE%DEBUG=Y )
257 changes: 132 additions & 125 deletions log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
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69 changes: 36 additions & 33 deletions log/report-hera.intel-log/rtreport.txt
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Original file line number Diff line number Diff line change
@@ -1,45 +1,48 @@
Run rocotostat...
Generate report...
WORKFLOW STARTED AT Tue Nov 26 20:44:33 2019 (+1574801073)
WORKFLOW STARTED AT Tue Jan 21 18:44:16 2020 (+1579632256)
Repository information:


REPO TOP:
develop cd134bc [origin/develop] Feature/add comparisons (#4)
Fetch URL: https://github.com/JessicaMeixner-NOAA/ufs-s2s-model
develop 478b092 [origin/develop] Debug mode capablility (#15)
Fetch URL: https://github.com/MinsukJi-NOAA/ufs-s2s-model
M CICE_SRC
M MOM6
M NEMS
M log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
M log/report-hera.intel-log/rtreport.txt

Entering 'CICE_SRC'
develop a2dc77d [origin/develop] Merge pull request #3 from JessicaMeixner-NOAA/feature/cheyenne
develop aafac32 [origin/develop] Code changes to support automatic debug compilation (#10)
Fetch URL: https://github.com/NOAA-EMC/CICE5.git

Entering 'FMS'
(HEAD detached at 46014b4) 46014b4 Merge pull request #8 from DusanJovic-NOAA/GFS-FMS
Fetch URL: https://github.com/NOAA-EMC/FMS

Entering 'FV3'
develop ea91f65 [origin/develop] The HAFS related developments for the write_grid_component (#10)
(HEAD detached at 26de321) 26de321 change ifmin to zero at fh00 for inline POST (#14)
Fetch URL: https://github.com/NOAA-EMC/fv3atm

Entering 'MOM6'
(HEAD detached at 5821b91) 5821b91 update MOM6: updated way of adding river runoff update mkmf: remove HDF5 references, add Cheyenne
develop 575f570 [origin/develop] Code change to compile.sh enables the following: DEBUG flag is passed down as an environment variable. Subsequently, DEBUG or REPRO is automatically selected.
Fetch URL: https://github.com/NOAA-EMC/MOM6-interface

Entering 'NEMS'
(HEAD detached at 22be22b) 22be22b Re-apply PR 11 (#15)
develop daae388 [origin/develop] Code changes to support DEBUG compilation based on appBuilder specification (#23)
Fetch URL: https://github.com/NOAA-EMC/NEMS.git

Entering 'stochastic_physics'
(HEAD detached at 25c3321) 25c3321 Merge pull request #2 from climbfuji/remove_transition_mode
(HEAD detached at 231e5b7) 231e5b7 Merge pull request #3 from climbfuji/fix_nonexistent_include_dir_warning
Fetch URL: https://github.com/noaa-psd/stochastic_physics


BUILD fv3_mom6_cice.exe: SUCCEEDED

TEST #1: PASS
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Tue Nov 26 20:44:44 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Tue Nov 26 20:44:45 UTC 2019
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Tue Jan 21 18:46:35 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Tue Jan 21 18:46:35 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -112,14 +115,14 @@ TEST #1: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Jessica.Meixner/scrub/rtgen.161564/exec/fv3_mom6_cice.exe
Expected md5sum: e9a026e9ef40aa76344612a8c37b37dd
Actual md5sum: e9a026e9ef40aa76344612a8c37b37dd
TEST PASSED AT Tue Nov 26 21:30:15 UTC 2019
File: /scratch1/NCEPDEV/stmp2/Minsuk.Ji/scrub/rtgen.107464/exec/fv3_mom6_cice.exe
Expected md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
Actual md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
TEST PASSED AT Tue Jan 21 19:31:26 UTC 2020

TEST #2: PASS
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Tue Nov 26 18:09:32 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold 384)
Tue Nov 26 18:09:32 UTC 2019
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Tue Jan 21 18:46:45 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Tue Jan 21 18:46:45 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -175,14 +178,14 @@ TEST #2: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Jessica.Meixner/scrub/rtgen.161564/exec/fv3_mom6_cice.exe
Expected md5sum: e9a026e9ef40aa76344612a8c37b37dd
Actual md5sum: e9a026e9ef40aa76344612a8c37b37dd
TEST PASSED AT Tue Nov 26 18:15:11 UTC 2019
File: /scratch1/NCEPDEV/stmp2/Minsuk.Ji/scrub/rtgen.107464/exec/fv3_mom6_cice.exe
Expected md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
Actual md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
TEST PASSED AT Tue Jan 21 18:51:59 UTC 2020

TEST #3: PASS
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Tue Nov 26 18:09:31 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold start)
Tue Nov 26 18:09:32 UTC 2019
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Tue Jan 21 18:47:44 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Tue Jan 21 18:47:44 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -238,14 +241,14 @@ TEST #3: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Jessica.Meixner/scrub/rtgen.161564/exec/fv3_mom6_cice.exe
Expected md5sum: e9a026e9ef40aa76344612a8c37b37dd
Actual md5sum: e9a026e9ef40aa76344612a8c37b37dd
TEST PASSED AT Tue Nov 26 18:12:38 UTC 2019
File: /scratch1/NCEPDEV/stmp2/Minsuk.Ji/scrub/rtgen.107464/exec/fv3_mom6_cice.exe
Expected md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
Actual md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
TEST PASSED AT Tue Jan 21 18:50:23 UTC 2020

TEST #4: PASS
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Tue Nov 26 20:45:08 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Tue Nov 26 20:45:08 UTC 2019
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Tue Jan 21 18:47:40 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Tue Jan 21 18:47:40 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -318,11 +321,11 @@ TEST #4: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Jessica.Meixner/scrub/rtgen.161564/exec/fv3_mom6_cice.exe
Expected md5sum: e9a026e9ef40aa76344612a8c37b37dd
Actual md5sum: e9a026e9ef40aa76344612a8c37b37dd
TEST PASSED AT Tue Nov 26 21:12:14 UTC 2019
WORKFLOW REPORT AT Tue Nov 26 21:31:21 2019 (+1574803881)
File: /scratch1/NCEPDEV/stmp2/Minsuk.Ji/scrub/rtgen.107464/exec/fv3_mom6_cice.exe
Expected md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
Actual md5sum: 0aa9572b3f8f814cd247c50e7ba125bd
TEST PASSED AT Tue Jan 21 19:14:38 UTC 2020
WORKFLOW REPORT AT Tue Jan 21 19:32:58 2020 (+1579635178)
Tests: 0 failed, 4 passed out of 4
Builds: 0 failed, 1 passed out of 1
REGRESSION TEST WAS SUCCESSFUL
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