Repositories list

• kb_djornl

  Public
  A KBase module wrapper and visualization for RWR tools which use the random walk with restart method on multiplex coexpression networks representing genes (nodes) and distinct lines of evidence (edges) facilitating the rapid determination of the functional context of a set of genes of interest.

  Python

  •

  MIT License

  •4•4•0•0•Updated Apr 4, 2025Apr 4, 2025

• sketch_service

  Public
  Service that returns similar genomes from a given assembly/genome ID

  Python

  •

  MIT License

  •3•0•0•15•Updated Apr 1, 2025Apr 1, 2025

• kb_unicycler

  Public
  Python

  •

  MIT License

  •2•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• KBaseReport

  Public
  Save plain text, HTML documents, and files as output from a KBase app

  Python

  •

  MIT License

  •9•0•1•0•Updated Mar 6, 2025Mar 6, 2025

• kb_trimmomatic

  Public
  Python

  •

  MIT License

  •11•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• DataFileUtil

  Public
  Python

  •

  MIT License

  •12•0•10•3•Updated Dec 9, 2024Dec 9, 2024

• GenomeFileUtil

  Public
  Python

  •

  MIT License

  •16•0•3•2•Updated Nov 1, 2024Nov 1, 2024

• kb_fasttree

  Public
  Python

  •

  MIT License

  •2•0•0•8•Updated Nov 1, 2024Nov 1, 2024

• kb_quast

  Public
  KBase wrapper for the QUAST assembly quality assessment tool.

  Python

  •

  MIT License

  •7•0•0•1•Updated Oct 8, 2024Oct 8, 2024

• kb_phylogenomics

  Public
  Python

  •

  MIT License

  •6•2•1•0•Updated Sep 13, 2024Sep 13, 2024

• StaticNarrative

  Public
  A dynamic service for creating and managing Static Narratives

  Python

  •

  MIT License

  •3•1•0•3•Updated Sep 1, 2024Sep 1, 2024

• NarrativeService

  Public
  Python

  •

  MIT License

  •10•0•0•0•Updated Aug 23, 2024Aug 23, 2024

• kb_sdk_actions

  Public
  GitHub Actions workflow for testing KBase SDK-based apps.

  Shell

  •0•0•0•2•Updated Aug 13, 2024Aug 13, 2024

• cb_annotation_ontology_api

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Aug 2, 2024Aug 2, 2024

• kb_ObjectUtilities

  Public
  Python

  •

  MIT License

  •0•0•0•1•Updated Jul 30, 2024Jul 30, 2024

• WsLargeDataIO

  Public
  Java

  •

  MIT License

  •3•0•1•0•Updated Jul 29, 2024Jul 29, 2024

• kb_staging_exporter

  Public
  Python

  •

  MIT License

  •3•0•1•0•Updated Jul 15, 2024Jul 15, 2024

• SetAPI

  Public
  Dynamic service for managing sets

  Python

  •

  MIT License

  •15•0•0•5•Updated Jun 21, 2024Jun 21, 2024

• kb_flye

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 29, 2024May 29, 2024

• kb_filtlong

  Public
  App to wrap filtlong in KBase

  Python

  •

  MIT License

  •0•0•0•0•Updated May 23, 2024May 23, 2024

• kb_polypolish

  Public
  KBase wrapper for Polypolish

  Python

  •

  MIT License

  •0•0•0•0•Updated May 23, 2024May 23, 2024

• kbase_hipmer

  Public
  Python

  •

  MIT License

  •2•0•2•0•Updated Apr 17, 2024Apr 17, 2024

• ReadsUtils

  Public
  Functions for uploading and downloading KBase reads files.

  Python

  •

  MIT License

  •16•0•5•2•Updated Apr 16, 2024Apr 16, 2024

• kb_combinatrix

  Public
  The KBase Combinatrix app allows you to generate all possible combinations of your favourite KBase datasets by matching items in the dataset based on attribute values.

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• AssemblyUtil

  Public
  Set of KBase functions for interacting with Assemblies and ContigSets using the KBase data_api

  Python

  •

  MIT License

  •13•1•4•2•Updated Mar 5, 2024Mar 5, 2024

• kb_gtdbtk

  Public
  GTDB-Tk App

  Python

  •

  MIT License

  •9•4•2•6•Updated Feb 8, 2024Feb 8, 2024

• GenericsUtil

  Public
  Utilities to import and map KBase Generic objects.

  Java

  •

  MIT License

  •1•0•0•0•Updated Dec 6, 2023Dec 6, 2023

• kb_orthofinder

  Public
  OrthoFinder app for annotating plant enzymes

  Python

  •

  MIT License

  •1•0•0•1•Updated Nov 14, 2023Nov 14, 2023

• kb_blast

  Public
  BLAST+ implementation for KBase

  Python

  •

  MIT License

  •8•0•0•1•Updated Oct 19, 2023Oct 19, 2023

• KBaseDataObjectToFileUtils

  Public
  Python

  •

  MIT License

  •2•0•0•2•Updated Oct 19, 2023Oct 19, 2023