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@NKI-AI NKI AI for Oncology Lab

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    45 repositories

    • itsper

      Public
      A simple CLI utility for computing the intra-tumoral stroma percentage biomarker from segmentations of histopathological tumor lesions.
      Python
      •
      MIT License
      •0•2•1•0•Updated Feb 20, 2025Feb 20, 2025

    • aiforoncology

      Public
      Monorepository for the AI for Oncology lab
      Apache License 2.0
      •0•0•0•0•Updated Feb 16, 2025Feb 16, 2025

    • direct

      Public
      Deep learning framework for MRI reconstruction
      deep-learningpytorchmedical-imaginginverse-problemsmri-reconstructionfastmri-challenge
      Python
      •
      Apache License 2.0
      •43•256•2•1•Updated Feb 7, 2025Feb 7, 2025

    • kosmos-cluster

      Public
      Repository for Kosmos Cluster
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •335•1•0•1•Updated Feb 6, 2025Feb 6, 2025

    • kosmos-documentation

      Public
      Documentation for the use of the internal AI for Oncology cluster Kosmos
      Makefile
      •2•1•0•0•Updated Jan 31, 2025Jan 31, 2025

    • ectil

      Public
      ECTIL: Label-efficient Computational Tumour Infiltrating Lymphocyte (TIL) assessment in breast cancer: Multicentre validation in 2,340 patients with breast cancer
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 21, 2025Jan 21, 2025

    • dlup

      Public
      Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute
      Python
      •
      Apache License 2.0
      •7•25•0•2•Updated Jan 17, 2025Jan 17, 2025

    • conference-deadlines

      Public
      ⏰ AI for oncology conference deadline countdowns
      JavaScript
      •
      MIT License
      •1k•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • ahcore

      Public archive
      Ahcore is the AI for Oncology core computational pathology toolkit
      Python
      •
      Apache License 2.0
      •1•15•22•6•Updated Oct 3, 2024Oct 3, 2024

    • kosmos-cluster-legacy

      Public
      Tools for building GPU clusters
      Jinja
      •
      BSD 3-Clause "New" or "Revised" License
      •335•1•0•1•Updated Jul 9, 2024Jul 9, 2024

    • libisyntax

      Public
      C
      •
      BSD 2-Clause "Simplified" License
      •7•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • xdrt

      Public
      XDRT (XDR Toolkit) is a python toolkit to work with the Elekta XDR and XVI file formats.
      radiotherapypythoncommand-line
      Python
      •
      Other
      •5•16•3•1•Updated Jun 27, 2024Jun 27, 2024

    • ansible-role-nvidia-driver

      Public
      Forked ansible nvidia driver role compatible with ubuntu 22
      Jinja
      •
      BSD 3-Clause "New" or "Revised" License
      •69•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • slidescore-api

      Public
      Python utilities to interface with SlideScore
      Python
      •
      Apache License 2.0
      •3•3•8•3•Updated Apr 30, 2024Apr 30, 2024

    • STAPLER

      Public
      STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.
      Python
      •
      Apache License 2.0
      •2•26•1•0•Updated Apr 24, 2024Apr 24, 2024

    • kandinsky-calibration

      Public
      Kandinsky conformal prediction for image segmentation algorithms
      Python
      •
      MIT License
      •2•9•0•0•Updated Feb 16, 2024Feb 16, 2024

    • OncoJit

      Public
      OncoJit - Accelerating Oncology Models with JIT Compilation
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 9, 2024Feb 9, 2024

    • meta-dinov2

      Public
      PyTorch code and models for the DINOv2 self-supervised learning method.
      Jupyter Notebook
      •
      Apache License 2.0
      •893•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • CERM

      Public
      Constrained Empirical Risk Minimization
      Python
      •
      Apache License 2.0
      •1•4•0•0•Updated Nov 24, 2023Nov 24, 2023

    • dicom-warehouse

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 22, 2023Nov 22, 2023

    • cluster-police

      Public
      Python utilities to prevent over usage of resources by cluster users
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2023Nov 12, 2023

    • ahcore-old

      Public
      Ahcore are the AI for Oncology histopathology core models
      Python
      •
      Apache License 2.0
      •1•0•5•2•Updated Oct 14, 2023Oct 14, 2023

    • openslide

      Public
      C library for reading virtual slide images
      C
      •
      GNU Lesser General Public License v2.1
      •226•2•0•0•Updated Jun 17, 2023Jun 17, 2023

    • mammo-ssl

      Public
      Self-supervised learning of mammogram data
      Jupyter Notebook
      •
      MIT License
      •333•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • kosmos-utilities

      Public
      Python utilities to manage the Kosmos cluster
      Python
      •
      Other
      •0•0•0•0•Updated Jan 15, 2023Jan 15, 2023

    • slidescope

      Public
      SlideScope is a web-based viewer to visualize outputs of computational pathology models
      Go
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 19, 2022Nov 19, 2022

    • openslide-go

      Public
      Unofficial OpenSlide bindings for Golang
      Go
      •
      GNU Lesser General Public License v2.1
      •0•3•3•0•Updated Nov 5, 2022Nov 5, 2022

    • .github

      Public
      0•0•0•0•Updated Sep 14, 2022Sep 14, 2022

    • ece_loss

      Public
      A PyTorch implementation of the Exclusive Cross Entropy Loss.
      Python
      •
      Apache License 2.0
      •1•20•1•0•Updated Aug 12, 2022Aug 12, 2022

    • hissl

      Public archive
      Histology Self-Supervised Learning
      Python
      •
      MIT License
      •4•12•0•0•Updated Jun 29, 2022Jun 29, 2022