Repositories list

• lta

  Public
  A Python command line interface for analysing lipidomics data

  Python

  •

  MIT License

  •1•2•3•1•Updated Jun 9, 2022Jun 9, 2022

• boolean_jaccard

  Public
  Calculate Jacquard metrics for boolean vectors.

  Python

  •

  MIT License

  •0•1•0•0•Updated Apr 27, 2022Apr 27, 2022

• polya_liftover

  Public
  A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

  pythonshellworkflow+ 9snakemakeliftoverbioinformatics-pipelinemultiqcreproducibilitytranscriptomicssingle-cell-rna-seq+ 2

  Python

  •

  MIT License

  •0•1•2•0•Updated Jan 27, 2022Jan 27, 2022

• GTExSnake

  Public
  A fully concurrent pipeline for querying transcript-level GTEx data in specific tissues

  snakemakecondamultithreading+ 4singularityreproducible-sciencebioinformaticspipeline

  Python

  •

  MIT License

  •1•3•0•0•Updated Jan 13, 2022Jan 13, 2022

• single_snake_sequencing

  Public
  A Snakemake workflow for standardised sc/snRNAseq analysis

  bioinformaticssnakemakeconda+ 3singularityreproducible-sciencescrna-seq

  Python

  •

  MIT License

  •2•2•0•0•Updated Jan 13, 2022Jan 13, 2022

• GTExQuery

  Public
  Multithreading, data handling, and file manipulation for the GTExSnake pipeline

  multithreadingpandasrequests+ 3gtexdata-handlingpython

  Python

  •

  MIT License

  •1•1•1•0•Updated Oct 27, 2021Oct 27, 2021

• BIC016a-Samuel-Furse

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Sep 10, 2021Sep 10, 2021

• BIC016-Samuel-Furse

  Public
  Lipid Traffic Analysis

  R

  •0•0•0•0•Updated Jul 30, 2021Jul 30, 2021

• BIC086

  Public
  GTEx isoform expression queries for transcription factors in human hypothalamus.

  Python

  •

  MIT License

  •0•2•2•0•Updated Jul 6, 2021Jul 6, 2021

• BIC015-Ornela-Maloku

  Public
  Analysis of ribosome profiling data from Arabidopsys thaliana

  R

  •2•0•0•0•Updated Mar 9, 2021Mar 9, 2021