Repositories list

• glmmSeq

  Public
  Gene-level general linear mixed model

  R

  •

  Other

  •10•0•0•0•Updated Oct 7, 2022Oct 7, 2022

• LBP-analysis

  Public
  2•0•0•0•Updated Aug 23, 2022Aug 23, 2022

• rnafusion

  Public
  RNA-seq analysis pipeline for detection gene-fusions

  Nextflow

  •

  MIT License

  •96•0•0•0•Updated Aug 16, 2022Aug 16, 2022

• R4RA

  Public
  Scripts to support publication: Deep Molecular Pathology Profiling of Synovial Tissue Biopsies in the R4RA Randomised Clinical Trial Identifies Predictive Signatures of Response/Resistance to Biologic Therapies in Rheumatoid Arthritis

  R

  •5•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• pyro-cov

  Public
  Pyro models of SARS-CoV-2 variants

  Jupyter Notebook

  •

  Apache License 2.0

  •28•0•0•0•Updated Mar 30, 2022Mar 30, 2022

• coloc

  Public
  Repo for the R package coloc

  R

  •43•0•0•0•Updated Mar 22, 2022Mar 22, 2022

• SARS-CoV-2-RBD_DMS

  Public
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •17•0•0•0•Updated Mar 3, 2022Mar 3, 2022

• MMQTL

  Public
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control for population structure and relatedness

  C++

  •4•0•0•0•Updated Feb 7, 2022Feb 7, 2022

• UK_Biobank_GWAS

  Public
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

  Python

  •107•0•0•0•Updated Aug 19, 2021Aug 19, 2021

• Clinicaltrials

  Public
  0•0•0•0•Updated Jul 3, 2021Jul 3, 2021

• TwoSampleMR

  Public
  R package for performing 2-sample MR using MR-Base database

  HTML

  •

  Other

  •177•0•0•0•Updated Aug 7, 2020Aug 7, 2020

• mRNA

  Public
  0•0•0•0•Updated Jun 9, 2020Jun 9, 2020

• gor

  Public
  GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

  Java

  •

  GNU Affero General Public License v3.0

  •13•0•0•0•Updated Apr 28, 2020Apr 28, 2020

• diamond

  Public
  Accelerated BLAST compatible local sequence aligner.

  C++

  •

  GNU General Public License v3.0

  •182•0•0•0•Updated Feb 7, 2020Feb 7, 2020

• GWAS

  Public
  R

  •0•0•0•0•Updated Jan 12, 2020Jan 12, 2020

• review

  Public
  0•0•0•0•Updated Jan 7, 2020Jan 7, 2020

• Methylation

  Public
  0•0•0•0•Updated Nov 23, 2019Nov 23, 2019

• Publication

  Public
  0•0•0•0•Updated Nov 17, 2019Nov 17, 2019

• PMRreproduce

  Public
  R

  •2•0•0•0•Updated Sep 6, 2019Sep 6, 2019

• Software

  Public
  0•0•0•0•Updated Aug 16, 2019Aug 16, 2019

• Clinical

  Public
  0•0•0•0•Updated Jul 31, 2019Jul 31, 2019

• Frequently_Asked_Questions

  Public
  0•0•0•0•Updated Jul 29, 2019Jul 29, 2019

• Pharmacogenomics

  Public
  0•0•0•0•Updated Jul 13, 2019Jul 13, 2019

• scRNAseq

  Public
  0•0•0•0•Updated Jun 3, 2019Jun 3, 2019

• EWAS

  Public
  R

  •0•0•0•0•Updated Jun 2, 2019Jun 2, 2019

• PheWAS

  Public
  0•0•0•0•Updated Jun 2, 2019Jun 2, 2019

• AnnualReviews

  Public
  0•0•0•0•Updated Jun 2, 2019Jun 2, 2019

• GWAS-scRNAseq-Integration

  Public
  A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS

  R

  •12•0•0•0•Updated Nov 1, 2018Nov 1, 2018

• devnotes

  Public
  Vince Buffalo's devnotes — ½ TIL, ½ notebook

  HTML

  •

  GNU General Public License v2.0

  •15•0•0•0•Updated Feb 15, 2016Feb 15, 2016