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    421 repositories

    • dynamic_routing_analysis

      Public
      Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      •0•2•0•0•Updated Mar 28, 2025Mar 28, 2025

    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      visualizationwebglbig-datatoolkit
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•6•Updated Mar 28, 2025Mar 28, 2025

    • ET_connectivity

      Public
      Code used to analyze the connectivity of ET neurons in MICrONs dataset
      Jupyter Notebook
      •
      Other
      •1•4•0•0•Updated Mar 28, 2025Mar 28, 2025

    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      electrophysiologyigor-prosupported
      IGOR Pro
      •
      Other
      •9•26•286•14•Updated Mar 28, 2025Mar 28, 2025

    • jem

      Public
      Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
      HTML
      •
      Other
      •3•3•0•0•Updated Mar 28, 2025Mar 28, 2025

    • biofile-finder

      Public
      An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •2•7•58•6•Updated Mar 28, 2025Mar 28, 2025

    • deep-neurographs

      Public
      A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.
      Python
      •
      MIT License
      •0•3•0•0•Updated Mar 28, 2025Mar 28, 2025

    • microns_tutorial

      Public
      MICrONS databook and analysis tutorials
      Jupyter Notebook
      •2•2•0•0•Updated Mar 27, 2025Mar 27, 2025

    • aibs-informatics-cdk-lib

      Public
      Library for AWS CDK Constructs related to AIBS Informatics Services
      aibs-informatics
      Python
      •
      Other
      •0•1•0•1•Updated Mar 26, 2025Mar 26, 2025

    • aibs-informatics-aws-lambda

      Public
      AWS Lambda library for AIBS Informatics lambda functions
      aibs-informatics
      Python
      •
      Other
      •0•1•0•0•Updated Mar 26, 2025Mar 26, 2025

    • neuroanalysis

      Public
      Modular analysis tools for neurophysiology data
      Python
      •
      MIT License
      •10•7•1•1•Updated Mar 26, 2025Mar 26, 2025

    • bmtk

      Public
      Brain Modeling Toolkit
      pythonsimulationmodelingneuroscienceneural-networksneuroinformaticsneuron
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •92•287•61•9•Updated Mar 26, 2025Mar 26, 2025

    • Consensus_SpinalCord

      Public
      0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • scrattch.mapping

      Public
      Genearlized mapping scripts for RNA-seq and Patch-seq data
      R
      •2•13•9•0•Updated Mar 26, 2025Mar 26, 2025

    • scrattch.patchseq

      Public
      R
      •1•0•0•1•Updated Mar 25, 2025Mar 25, 2025

    • scrattch.taxonomy

      Public
      Allen Institute Taxonomy building R package
      HTML
      •1•1•9•0•Updated Mar 25, 2025Mar 25, 2025

    • TEM_config

      Public
      1•0•1•1•Updated Mar 25, 2025Mar 25, 2025

    • patchseq_autotrace

      Public
      Execution of patchseq slice autotrace pipeline
      Python
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • asap-modules

      Public
      Shared repo for EM connectomics and Array Tomography render based image processing modules
      Python
      •
      BSD 2-Clause "Simplified" License
      •5•14•13•1•Updated Mar 25, 2025Mar 25, 2025

    • TEM_comms

      Public
      Pigeon messages for the next generation TEM imaging system
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Mar 23, 2025Mar 23, 2025

    • aibs-informatics-aws-utils

      Public
      Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team
      pythonawsaibs-informatics
      Python
      •
      Other
      •0•1•1•0•Updated Mar 21, 2025Mar 21, 2025

    • abc_atlas_access

      Public
      Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
      Jupyter Notebook
      •
      Other
      •24•60•14•6•Updated Mar 20, 2025Mar 20, 2025

    • standard_morph

      Public
      Python
      •0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • render-python

      Public
      A python interface for render
      Python
      •
      BSD 2-Clause "Simplified" License
      •10•7•14•1•Updated Mar 20, 2025Mar 20, 2025

    • BigFeta

      Public
      Big FeaTure Aligner: a scalable solution for feature alignment
      Python
      •
      BSD 2-Clause "Simplified" License
      •2•3•3•1•Updated Mar 20, 2025Mar 20, 2025

    • npc_lims

      Public
      Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
      Python
      •
      MIT License
      •0•0•3•0•Updated Mar 20, 2025Mar 20, 2025

    • MapMySections

      Public
      GitHub starting page for the MapMySections data challenge
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

    • openscope_databook

      Public
      OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
      visualizationpythonreproducible-researchdata-visualizationdata-analysisnwbdandi-archive
      Python
      •
      Other
      •22•65•16•0•Updated Mar 19, 2025Mar 19, 2025

    • EducationAndEngagement

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • scrattch

      Public
      Single cell RNA-seq analysis for transcriptomic type characterization
      rumbrellatranscriptomicsscrattch
      R
      •
      Other
      •3•36•0•0•Updated Mar 18, 2025Mar 18, 2025