Merge branch 'main' into bootstrap_weights

.envs/testenv-linux.yml

@@ -16,7 +16,7 @@ dependencies:
   - click  # run, tests
   - cloudpickle  # run, tests
   - joblib  # run, tests
-  - numpy>=1.17.0  # run, tests
+  - numpy<2.0  # run, tests
   - pandas  # run, tests
   - plotly  # run, tests
   - pybaum >= 0.1.2  # run, tests

.envs/testenv-others.yml

@@ -15,7 +15,7 @@ dependencies:
   - click  # run, tests
   - cloudpickle  # run, tests
   - joblib  # run, tests
-  - numpy>=1.17.0  # run, tests
+  - numpy<2.0  # run, tests
   - pandas  # run, tests
   - plotly  # run, tests
   - pybaum >= 0.1.2  # run, tests

.envs/testenv-pandas.yml

@@ -15,7 +15,7 @@ dependencies:
   - click  # run, tests
   - cloudpickle  # run, tests
   - joblib  # run, tests
-  - numpy>=1.17.0  # run, tests
+  - numpy<2.0  # run, tests
   - plotly  # run, tests
   - pybaum >= 0.1.2  # run, tests
   - scipy>=1.2.1  # run, tests

.github/workflows/main.yml

@@ -26,14 +26,13 @@ jobs:
           - '3.11'
           - '3.12'
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: create build environment
-        uses: mamba-org/provision-with-micromamba@main
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ./.envs/testenv-linux.yml
-          environment-name: estimagic
-          cache-env: true
-          extra-specs: |
+          cache-environment: true
+          create-args: |
             python=${{ matrix.python-version }}
       - name: run pytest
         shell: bash -l {0}
@@ -42,7 +41,7 @@ jobs:
           pytest --cov-report=xml --cov=./
       - name: Upload coverage report.
         if: runner.os == 'Linux' && matrix.python-version == '3.10'
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v4
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
   run-tests-win-and-mac:
@@ -59,14 +58,13 @@ jobs:
           - '3.10'
           - '3.11'
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: create build environment
-        uses: mamba-org/provision-with-micromamba@main
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ./.envs/testenv-others.yml
-          environment-name: estimagic
-          cache-env: true
-          extra-specs: |
+          cache-environment: true
+          create-args: |
             python=${{ matrix.python-version }}
       - name: run pytest
         shell: bash -l {0}
@@ -87,14 +85,13 @@ jobs:
         python-version:
           - '3.11'
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: create build environment
-        uses: mamba-org/provision-with-micromamba@main
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ./.envs/testenv-pandas.yml
-          environment-name: estimagic
-          cache-env: true
-          extra-specs: |
+          cache-environment: true
+          create-args: |
             python=${{ matrix.python-version }}
       - name: run pytest
         shell: bash -l {0}
@@ -107,14 +104,13 @@ jobs:
     name: Run code snippets in documentation
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: create build environment
-        uses: mamba-org/provision-with-micromamba@main
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ./.envs/testenv-linux.yml
-          environment-name: estimagic
-          cache-env: true
-          extra-specs: python=3.10
+          cache-environment: true
+          create-args: python=3.10
       - name: run sphinx
         shell: bash -l {0}
         run: |-

.github/workflows/publish-to-pypi.yml

@@ -6,9 +6,9 @@ jobs:
     name: Build and publish Python 🐍 distributions 📦 to PyPI
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: '3.10'
       - name: Install pypa/build

.pre-commit-config.yaml

@@ -62,7 +62,7 @@ repos:
       - id: black
         language_version: python3.10
   - repo: https://github.com/asottile/blacken-docs
-    rev: 1.16.0
+    rev: 1.18.0
     hooks:
       - id: blacken-docs
         exclude: docs/source/how_to_guides/optimization/how_to_specify_constraints.md
@@ -79,7 +79,7 @@ repos:
           - --blank
         exclude: src/estimagic/optimization/algo_options.py
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.3
+    rev: v0.5.0
     hooks:
       - id: ruff
   - repo: https://github.com/nbQA-dev/nbQA