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update comment test resources
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KaiWaldrant committed Jul 5, 2023
1 parent 2104e04 commit ba5713d
Showing 1 changed file with 1 addition and 4 deletions.
5 changes: 1 addition & 4 deletions src/datasets/resource_test_scripts/multimodal.sh
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/bin/bash
#
#make sure the following command has been executed
#viash_build -q 'label_projection|common'
#viash ns build -q 'datasets|common' --parallel --setup cb

# get the root of the directory
REPO_ROOT=$(git rev-parse --show-toplevel)
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--output_mod1 $DATASET_DIR/temp_mod1_full.h5ad \
--output_mod2 $DATASET_DIR/temp_mod2_full.h5ad

# wget https://raw.githubusercontent.com/theislab/scib/c993ffd9ccc84ae0b1681928722ed21985fb91d1/scib/resources/g2m_genes_tirosh_hm.txt -O $DATASET_DIR/temp_g2m_genes_tirosh_hm.txt
# wget https://raw.githubusercontent.com/theislab/scib/c993ffd9ccc84ae0b1681928722ed21985fb91d1/scib/resources/s_genes_tirosh_hm.txt -O $DATASET_DIR/temp_s_genes_tirosh_hm.txt
# KEEP_FEATURES=`cat $DATASET_DIR/temp_g2m_genes_tirosh_hm.txt $DATASET_DIR/temp_s_genes_tirosh_hm.txt | paste -sd ":" -`

# subsample
viash run src/datasets/processors/subsample/config.vsh.yaml -- \
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