Merge pull request #206 from openproblems-bio/fix/viash-test-bugs

fix viash test bugs
openproblems-bio · Jul 24, 2023 · 112c142 · 112c142
2 parents c7c4ab7 + bc76571
commit 112c142
Show file tree

Hide file tree

Showing 3 changed files with 8 additions and 2 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -20,8 +20,13 @@
 
 ### BUG FIXES
 
+* `dimensionality_reduction/methods/tsne`: Use GitHub version of MulticoreTSNE.
+
+* `label_projection/methods/seurat_transferdata`: Temporarily disable component as it appears to not be working (PR #206).
+
 * Remove the ns-list action for workflows in integration test (PR #208)
 
+
 ## common
 
 ### NEW FUNCTIONALITY

diff --git a/src/tasks/dimensionality_reduction/methods/tsne/config.vsh.yaml b/src/tasks/dimensionality_reduction/methods/tsne/config.vsh.yaml
@@ -42,8 +42,8 @@ platforms:
           - cmake
           - gcc
       - type: python
-        packages:
-          - MulticoreTSNE
+        github:
+          - DmitryUlyanov/Multicore-TSNE
   - type: nextflow
     directives: 
       label: [ highmem, highcpu ]
diff --git a/src/tasks/label_projection/methods/seurat_transferdata/config.vsh.yaml b/src/tasks/label_projection/methods/seurat_transferdata/config.vsh.yaml
@@ -1,5 +1,6 @@
 __merge__: ../../api/comp_method.yaml
 functionality:
+  status: disabled
   name: "seurat_transferdata"
   info:
     label: Seurat TransferData