Create deploy_basic.R

deploy_basic.R

@@ -0,0 +1,26 @@
+#!/usr/bin/env Rscript
+# Copyright (C) 2021-2024 Xena Shiny Team
+
+# The cache directory and port all should be consistent with
+# configs in Dockerfile.
+
+# Check system info
+print(Sys.info())
+
+# Set options and run app
+
+if(dir.exists("/xena")){ 
+  # hiplot
+  #xena.cacheDir = "/xena"
+  #xena.zenodoDir = "/xena/datasets"
+} else {
+  # zhoulab
+  xena.cacheDir = "/home/shiny/apps/xena/cache"
+  xena.zenodoDir = "/home/shiny/apps/xena/datasets/"
+}
+options(xena.cacheDir = xena.cacheDir, xena.zenodoDir = xena.zenodoDir)
+options(xena.runMode = "server")
+
+library(UCSCXenaShiny)
+app_run2("server", content = "sq")
+