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Merge pull request #346 from lishensuo/master
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Modify README.md file
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lishensuo authored Jul 28, 2024
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15 changes: 15 additions & 0 deletions README.md
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Expand Up @@ -7,11 +7,15 @@ status](https://www.r-pkg.org/badges/version/UCSCXenaShiny)](https://cran.r-proj
![R-CMD-check](https://github.com/openbiox/UCSCXenaShiny/workflows/R-CMD-check/badge.svg)
[![check in Biotreasury](https://img.shields.io/badge/Biotreasury-collected-brightgreen)](https://biotreasury.rjmart.cn/#/tool?id=61144)

![](https://ucscxenashiny-1301043367.cos.ap-shanghai.myqcloud.com/Shiny-figures/Github_readme.png)

**UCSCXenaShiny** is an R package for interactively exploring UCSC Xena.
It is mainly designed to provide a web app (built on the top of [`{shiny}`](https://shiny.posit.co/) framework and [`{UCSCXenaTools}`](https://github.com/ropensci/UCSCXenaTools/) package) for downloading,
analyzing and visualizing datasets from [UCSC
Xena](https://xenabrowser.net/datapages/).



![Alt](https://repobeats.axiom.co/api/embed/2f1f0c9a7a5c3c710febb3ee3d1e26f249d5a3ed.svg "Repobeats analytics image")

Please cite any of the following articles when you used **UCSCXenaShiny** in your study:
Expand Down Expand Up @@ -200,6 +204,17 @@ It can be 'client' or 'server'. You can directly set it in `app_run()`.

## :movie_camera: Videos

#### UCSCXenaShiny v2
**Chinese website**
- Home page: <https://www.bilibili.com/video/BV1rT421k7Zv>
- T•P•C Modules: <https://www.bilibili.com/video/BV1E14218779>
- T•P•C Pipelines: <https://www.bilibili.com/video/BV141421t71g>
- Repository/General Analysis/Download: <https://www.bilibili.com/video/BV1TZ421K7VH>

**English website**: <https://www.youtube.com/watch?v=VnIlzcVB1Ow&list=PLN1jxcOQONG6pH8zvHr-qhI3MMtvluITf>

#### UCSCXenaShiny v1

- Home page: <https://www.bilibili.com/video/bv1R84y1F7WT>.
- Repository page: <https://www.bilibili.com/video/bv1Mq4y1J73o>.
- General Analysis page: <https://www.bilibili.com/video/bv1p64y1U7iU>.
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2 changes: 1 addition & 1 deletion inst/shinyapp/ui/help.R
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Expand Up @@ -40,7 +40,7 @@ ui.page_help <- function() {
# )
# ),
tabPanel(a("UCSCXenaShiny v1",
href="https://shixiangwang.shinyapps.io/ucscxenashiny/",
href="https://shiny.zhoulab.ac.cn/UCSCXenaShinyV1/",
target="_blank")
)
)
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