-
Notifications
You must be signed in to change notification settings - Fork 3
Add WeatherNext-style ONNX conversion demo #469
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Draft
Copilot
wants to merge
18
commits into
main
Choose a base branch
from
copilot/convert-weather-next
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Draft
Changes from 8 commits
Commits
Show all changes
18 commits
Select commit
Hold shift + click to select a range
2befa14
Initial plan
Copilot ad84140
Add WeatherNext ONNX demo
Copilot d9a3806
Address WeatherNext demo review feedback
Copilot d58c232
Refine WeatherNext demo graph wiring
Copilot 4fde44f
Use dynamic reshape in WeatherNext demo
Copilot 9a7b5a4
Document WeatherNext demo config shim
Copilot 1a008e6
Keep WeatherNext validation NumPy compatible
Copilot 8c98c0e
Clarify WeatherNext demo graph comments
Copilot 2ce33cc
Add formal WeatherNext model support
Copilot d7626ad
Address WeatherNext review cleanup
Copilot 85c157c
Harden WeatherNext data helpers
Copilot d9835c9
Simplify WeatherNext xarray stacking
Copilot 460f50b
Finalize WeatherNext review fixes
Copilot f99b0dc
Expose WeatherNext output variable count
Copilot 19c6ae2
Clarify WeatherNext data docs
Copilot f588c1a
Make WeatherNext projections explicit
Copilot 6156702
Cast WeatherNext feeds for f16 inference
Copilot f9191fd
Fix WeatherNext inference lint
justinchuby File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Some comments aren't visible on the classic Files Changed page.
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,353 @@ | ||
| #!/usr/bin/env python | ||
| # Copyright (c) Microsoft Corporation. | ||
| # Licensed under the MIT License. | ||
|
|
||
| """WeatherNext-style ONNX conversion demo. | ||
|
|
||
| WeatherNext 2 is a JAX/Haiku + xarray model rather than a HuggingFace | ||
| ``transformers`` model, so it does not fit the normal ``mobius build`` path. | ||
| This example demonstrates the ONNX workflow for that family of models by | ||
| defining the same high-level one-step forecast contract used by WeatherNext: | ||
|
|
||
| ``input weather grid + forcings + stochastic noise → next weather grid``. | ||
|
|
||
| The tiny model below uses WeatherNext-like graph data flow: | ||
|
|
||
| 1. encode lat/lon grid variables at each grid cell, | ||
| 2. aggregate grid cells onto a mesh, | ||
| 3. update the mesh latent state, | ||
| 4. project mesh latents back to the grid, and | ||
| 5. decode per-grid-cell forecast variables. | ||
|
|
||
| It intentionally uses small deterministic weights so the demo can be run | ||
| without downloading WeatherNext checkpoints. The graph I/O and component | ||
| boundaries are the pieces to keep when replacing the toy modules with a full | ||
| translation of google-deepmind/weathernext's Haiku modules and ``.npz`` | ||
| checkpoints. | ||
|
|
||
| Usage:: | ||
|
|
||
| python examples/weathernext.py output/weathernext-mini --validate | ||
|
|
||
| python examples/weathernext.py output/weathernext-mini \ | ||
| --lat 8 --lon 16 --mesh-nodes 12 --hidden-size 32 | ||
| """ | ||
|
|
||
| from __future__ import annotations | ||
|
|
||
| import argparse | ||
| import os | ||
| import sys | ||
| from dataclasses import dataclass | ||
|
|
||
| import numpy as np | ||
| import onnx_ir as ir | ||
| from onnxscript import GraphBuilder, OpBuilder, nn | ||
|
|
||
| import mobius | ||
| from mobius import OPSET_VERSION, ArchitectureConfig, ModelPackage, build_from_module | ||
| from mobius.tasks import ModelTask | ||
|
|
||
|
|
||
| @dataclass(frozen=True) | ||
| class WeatherNextDemoShape: | ||
| """Concrete shape for the one-step WeatherNext forecast demo.""" | ||
|
|
||
| lat: int | ||
| lon: int | ||
| mesh_nodes: int | ||
| input_variables: int | ||
| forcing_variables: int | ||
| noise_channels: int | ||
| output_variables: int | ||
| hidden_size: int | ||
|
|
||
| @property | ||
| def grid_points(self) -> int: | ||
| return self.lat * self.lon | ||
|
|
||
| @property | ||
| def encoder_channels(self) -> int: | ||
| return self.input_variables + self.forcing_variables + self.noise_channels | ||
|
|
||
|
|
||
| def _make_parameter(rng: np.random.Generator, shape: tuple[int, ...]) -> nn.Parameter: | ||
| values = rng.standard_normal(shape).astype(np.float32) * 0.05 | ||
| return nn.Parameter(list(shape), data=ir.tensor(values)) | ||
|
|
||
|
|
||
| class DemoLinear(nn.Module): | ||
| """Small deterministic ``Linear`` layer for a self-contained runnable demo.""" | ||
|
|
||
| def __init__(self, rng: np.random.Generator, in_features: int, out_features: int): | ||
| super().__init__() | ||
| self.weight = _make_parameter(rng, (out_features, in_features)) | ||
| self.bias = _make_parameter(rng, (out_features,)) | ||
|
|
||
| def forward(self, op: OpBuilder, x: ir.Value) -> ir.Value: | ||
| # Project the trailing feature dimension: [..., in_features] -> [..., out_features]. | ||
| x = op.MatMul(x, op.Transpose(self.weight, perm=[1, 0])) | ||
| return op.Add(x, self.bias) | ||
|
|
||
|
|
||
| class WeatherNextGridMeshBlock(nn.Module): | ||
| """One grid→mesh→grid block mirroring WeatherNext's graph-forecast data flow.""" | ||
|
|
||
| def __init__(self, rng: np.random.Generator, shape: WeatherNextDemoShape): | ||
| super().__init__() | ||
| self._shape = shape | ||
| self.grid_encoder = DemoLinear(rng, shape.encoder_channels, shape.hidden_size) | ||
| self.mesh_update_in = DemoLinear(rng, shape.hidden_size, 4 * shape.hidden_size) | ||
| self.mesh_update_out = DemoLinear(rng, 4 * shape.hidden_size, shape.hidden_size) | ||
| self.grid_decoder = DemoLinear(rng, shape.hidden_size, shape.output_variables) | ||
|
|
||
| grid_to_mesh = _projection_matrix(shape.mesh_nodes, shape.grid_points) | ||
| mesh_to_grid = _projection_matrix(shape.grid_points, shape.mesh_nodes) | ||
| self.grid_to_mesh = nn.Parameter( | ||
| [shape.mesh_nodes, shape.grid_points], data=ir.tensor(grid_to_mesh) | ||
| ) | ||
| self.mesh_to_grid = nn.Parameter( | ||
| [shape.grid_points, shape.mesh_nodes], data=ir.tensor(mesh_to_grid) | ||
| ) | ||
|
|
||
| def forward( | ||
| self, | ||
| op: OpBuilder, | ||
| input_state: ir.Value, | ||
| forcings: ir.Value, | ||
| sample_noise: ir.Value, | ||
| ) -> ir.Value: | ||
| s = self._shape | ||
|
|
||
| # Concatenate per-cell weather variables, known future forcings, and FGN noise: | ||
| # [B, lat, lon, input+forcing+noise]. | ||
| grid_features = op.Concat(input_state, forcings, sample_noise, axis=-1) | ||
|
|
||
| # Encode each lat/lon cell independently, then flatten the grid to points: | ||
| # [B, lat, lon, hidden] -> [B, grid_points, hidden]. | ||
| grid_latent = op.Tanh(self.grid_encoder(op, grid_features)) | ||
| batch_dim = op.Shape(grid_latent, start=0, end=1) | ||
| flat_grid_shape = op.Concat( | ||
| batch_dim, | ||
| op.Constant(value_ints=[s.grid_points, s.hidden_size]), | ||
| axis=0, | ||
| ) | ||
| grid_points = op.Reshape( | ||
| grid_latent, | ||
| flat_grid_shape, | ||
| ) | ||
|
|
||
| # Aggregate grid points onto the mesh with a fixed sparse-style projection. | ||
| # MatMul broadcasts the 2-D projection over batch: | ||
| # [mesh_nodes, grid_points] @ [B, grid_points, hidden] -> [B, mesh_nodes, hidden]. | ||
| mesh_latent = op.MatMul(self.grid_to_mesh, grid_points) | ||
|
|
||
| # A compact MLP stands in for WeatherNext's mesh GNN/update blocks. | ||
| mesh_delta = op.Tanh(self.mesh_update_in(op, mesh_latent)) | ||
| mesh_latent = op.Add(mesh_latent, self.mesh_update_out(op, mesh_delta)) | ||
|
|
||
| # Decode mesh latents back onto the lat/lon grid and add the encoded-grid residual. | ||
| # MatMul again broadcasts the 2-D projection over batch: | ||
| # [grid_points, mesh_nodes] @ [B, mesh_nodes, hidden] -> [B, grid_points, hidden]. | ||
| grid_delta = op.MatMul(self.mesh_to_grid, mesh_latent) | ||
| grid_points = op.Add(grid_points, grid_delta) | ||
|
|
||
| # Return a one-step forecast grid: [B, lat, lon, output_variables]. | ||
| forecast_points = self.grid_decoder(op, grid_points) | ||
| forecast_shape = op.Concat( | ||
| batch_dim, | ||
| op.Constant(value_ints=[s.lat, s.lon, s.output_variables]), | ||
| axis=0, | ||
| ) | ||
| return op.Reshape( | ||
| forecast_points, | ||
| forecast_shape, | ||
| ) | ||
|
|
||
|
|
||
| class WeatherNextDemoTask(ModelTask): | ||
| """Task wiring for a one-step WeatherNext-style forecast graph.""" | ||
|
|
||
| model_roles = {"model": "forecast"} | ||
|
|
||
| def __init__(self, shape: WeatherNextDemoShape): | ||
| self._shape = shape | ||
|
|
||
| def build(self, module: nn.Module, config: ArchitectureConfig) -> ModelPackage: | ||
| batch = ir.SymbolicDim("batch") | ||
| s = self._shape | ||
|
|
||
| graph, builder = _make_demo_graph("weathernext_one_step_forecast") | ||
| op = builder.op | ||
|
|
||
| input_state = builder.input( | ||
| "input_state", | ||
| dtype=config.dtype, | ||
| shape=[batch, s.lat, s.lon, s.input_variables], | ||
| ) | ||
| forcings = builder.input( | ||
| "forcings", | ||
| dtype=config.dtype, | ||
| shape=[batch, s.lat, s.lon, s.forcing_variables], | ||
| ) | ||
| sample_noise = builder.input( | ||
| "sample_noise", | ||
| dtype=config.dtype, | ||
| shape=[batch, s.lat, s.lon, s.noise_channels], | ||
| ) | ||
|
|
||
| next_state = module(op, input_state, forcings, sample_noise) | ||
| builder.add_output(next_state, "next_state") | ||
|
|
||
| return ModelPackage({"model": _make_demo_model(graph)}, config=config) | ||
|
|
||
|
|
||
| def _make_demo_graph(name: str) -> tuple[ir.Graph, GraphBuilder]: | ||
| graph = ir.Graph( | ||
| [], | ||
| [], | ||
| nodes=[], | ||
| name=name, | ||
| opset_imports={"": OPSET_VERSION, "com.microsoft": 1}, | ||
| ) | ||
| return graph, GraphBuilder(graph) | ||
|
|
||
|
|
||
| def _make_demo_model(graph: ir.Graph) -> ir.Model: | ||
| model = ir.Model(graph, ir_version=11) | ||
| model.producer_name = "mobius" | ||
| model.producer_version = mobius.__version__ | ||
| return model | ||
|
|
||
|
|
||
| def _projection_matrix(rows: int, cols: int) -> np.ndarray: | ||
| """Create deterministic normalized projections between grid and mesh points.""" | ||
|
|
||
| row_positions = np.linspace(0.0, 1.0, rows, dtype=np.float32)[:, None] | ||
| col_positions = np.linspace(0.0, 1.0, cols, dtype=np.float32)[None, :] | ||
| distance = np.abs(row_positions - col_positions) | ||
| weights = np.maximum(1.0 - 2.0 * distance, 0.0) | ||
| weights += 1e-3 | ||
| weights /= weights.sum(axis=1, keepdims=True) | ||
| return weights.astype(np.float32) | ||
|
|
||
|
|
||
| def build_weathernext_demo_package(shape: WeatherNextDemoShape, dtype: ir.DataType) -> ModelPackage: | ||
| """Build the demo WeatherNext-style ONNX package.""" | ||
|
|
||
| rng = np.random.default_rng(20260810) | ||
| module = WeatherNextGridMeshBlock(rng, shape) | ||
| # build_from_module currently accepts BaseModelConfig subclasses; this task reads only | ||
| # config.dtype, while build_from_module validates and uses dtype to cast parameters. | ||
| # The remaining ArchitectureConfig fields are inert validation shims. A production | ||
| # WeatherNext port should replace this with a dedicated task/config pair that records | ||
| # grid resolution, variable metadata, and mesh topology instead of LLM placeholders. | ||
| config = ArchitectureConfig( | ||
| vocab_size=0, | ||
| hidden_size=shape.hidden_size, | ||
| intermediate_size=4 * shape.hidden_size, | ||
| num_hidden_layers=1, | ||
| num_attention_heads=1, | ||
| num_key_value_heads=1, | ||
| head_dim=shape.hidden_size, | ||
| dtype=dtype, | ||
| ) | ||
| return build_from_module(module, config, task=WeatherNextDemoTask(shape)) | ||
|
|
||
|
|
||
| def _resolve_dtype(name: str) -> ir.DataType: | ||
| if name == "f32": | ||
| return ir.DataType.FLOAT | ||
| if name == "f16": | ||
| return ir.DataType.FLOAT16 | ||
| raise ValueError(f"Unsupported dtype: {name}") | ||
|
|
||
|
|
||
| def _validate_with_ort(output_dir: str, shape: WeatherNextDemoShape) -> None: | ||
| try: | ||
| import onnxruntime as ort | ||
| except ImportError: | ||
| print("onnxruntime is not installed; skipping validation.", file=sys.stderr) | ||
| return | ||
|
|
||
| model_path = os.path.join(output_dir, "model.onnx") | ||
| sess = ort.InferenceSession(model_path, providers=["CPUExecutionProvider"]) | ||
| rng = np.random.default_rng(42) | ||
| feeds = { | ||
| "input_state": rng.standard_normal( | ||
| (1, shape.lat, shape.lon, shape.input_variables) | ||
| ).astype(np.float32), | ||
| "forcings": rng.standard_normal( | ||
| (1, shape.lat, shape.lon, shape.forcing_variables) | ||
| ).astype(np.float32), | ||
| "sample_noise": rng.standard_normal( | ||
| (1, shape.lat, shape.lon, shape.noise_channels) | ||
| ).astype(np.float32), | ||
| } | ||
| (next_state,) = sess.run(None, feeds) | ||
| print(f"Validation output next_state shape: {next_state.shape}") | ||
| print(f"Validation output range: [{next_state.min():.6f}, {next_state.max():.6f}]") | ||
|
|
||
|
|
||
| def _parse_args() -> argparse.Namespace: | ||
| parser = argparse.ArgumentParser( | ||
| description="Build a runnable WeatherNext-style grid→mesh→grid ONNX demo.", | ||
| ) | ||
| parser.add_argument("output_dir", help="Directory to save model.onnx and model.onnx.data.") | ||
| parser.add_argument("--lat", type=int, default=4, help="Number of latitude points.") | ||
| parser.add_argument("--lon", type=int, default=8, help="Number of longitude points.") | ||
| parser.add_argument("--mesh-nodes", type=int, default=6, help="Number of demo mesh nodes.") | ||
| parser.add_argument("--input-variables", type=int, default=5, help="Input weather channels.") | ||
| parser.add_argument("--forcing-variables", type=int, default=2, help="Known forcing channels.") | ||
| parser.add_argument("--noise-channels", type=int, default=2, help="FGN stochastic noise channels.") | ||
| parser.add_argument("--output-variables", type=int, default=5, help="Forecast weather channels.") | ||
| parser.add_argument("--hidden-size", type=int, default=16, help="Latent feature size.") | ||
| parser.add_argument("--dtype", choices=["f32", "f16"], default="f32", help="ONNX weight dtype.") | ||
| parser.add_argument("--validate", action="store_true", help="Run one ONNX Runtime inference.") | ||
| return parser.parse_args() | ||
|
|
||
|
|
||
| def main() -> None: | ||
| args = _parse_args() | ||
| shape = WeatherNextDemoShape( | ||
| lat=args.lat, | ||
| lon=args.lon, | ||
| mesh_nodes=args.mesh_nodes, | ||
| input_variables=args.input_variables, | ||
| forcing_variables=args.forcing_variables, | ||
| noise_channels=args.noise_channels, | ||
| output_variables=args.output_variables, | ||
| hidden_size=args.hidden_size, | ||
| ) | ||
|
|
||
| if min( | ||
| shape.lat, | ||
| shape.lon, | ||
| shape.mesh_nodes, | ||
| shape.input_variables, | ||
| shape.forcing_variables, | ||
| shape.noise_channels, | ||
| shape.output_variables, | ||
| shape.hidden_size, | ||
| ) <= 0: | ||
| raise ValueError("All shape arguments must be positive.") | ||
|
|
||
| print("Building WeatherNext-style one-step forecast ONNX graph...") | ||
| print(f" grid: {shape.lat} x {shape.lon} ({shape.grid_points} cells)") | ||
| print(f" mesh nodes: {shape.mesh_nodes}") | ||
| print(f" channels: input={shape.input_variables}, forcing={shape.forcing_variables}, " | ||
| f"noise={shape.noise_channels}, output={shape.output_variables}") | ||
|
|
||
| pkg = build_weathernext_demo_package(shape, dtype=_resolve_dtype(args.dtype)) | ||
| model = pkg["model"] | ||
| print(f"Built model with {model.graph.num_nodes()} ONNX nodes.") | ||
|
|
||
| pkg.save(args.output_dir, check_weights=True, progress_bar=False) | ||
| print(f"Saved WeatherNext demo package to {args.output_dir!r}.") | ||
|
|
||
| if args.validate: | ||
| _validate_with_ort(args.output_dir, shape) | ||
|
|
||
|
|
||
| if __name__ == "__main__": | ||
| main() | ||
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.