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8 changes: 4 additions & 4 deletions omero/analysis_scripts/Plot_Profile.py
Original file line number Diff line number Diff line change
Expand Up @@ -382,19 +382,19 @@ def processImages(conn, scriptParams):
sumAvgOptions = [rstring('Average'), rstring('Sum'), rstring('Average, with raw data')]

client = scripts.client('Plot_Profile.py', """This script processes Images, which have Line or PolyLine ROIs and outputs
the data as csv files, for plotting in E.g. exell.""",
the data as CSV files, for plotting in e.g. Excel.""",

scripts.String("Data_Type", optional=False, grouping="1",
description="Choose source of images (only Image supported)", values=dataTypes, default="Image"),
description="Choose source of images (only Image supported).", values=dataTypes, default="Image"),

scripts.List("IDs", optional=False, grouping="2",
description="List of Image IDs to process.").ofType(rlong(0)),

scripts.Int("Line_Width", optional=False, grouping="3", default=1,
description="Width in pixels of each line plot", min=1),
description="Width in pixels of each line plot.", min=1),

scripts.String("Sum_or_Average", optional=False, grouping="3.1", default='Average',
description="Output the Sum or Average (mean) of Line Profile. Option to include ALL line data with Average", values=sumAvgOptions),
description="Output the Sum or Average (mean) of Line Profile. Option to include ALL line data with Average.", values=sumAvgOptions),

scripts.List("Channels", grouping="4",
description="Optional list of Channels to process. E.g 1, 2. Use ALL Channels by default.").ofType(omero.rtypes.rint(0)),
Expand Down