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ometa with history #192

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f9798d7
Adding 'TIFF' format to Movie_Figure. See #10000
Dec 18, 2012
f4da151
Adding TIFF support to Batch_Image_Export
Dec 19, 2012
de050b5
Default format='JPEG' for export & figure scripts
Dec 19, 2012
f1abf9e
Merge pull request #16 from will-moore/figure_scripts_tiff_10000
jburel Dec 20, 2012
65f3687
Merge pull request #18 from will-moore/split_view_merged_10109
joshmoore Feb 15, 2013
cecbd75
Fix headers of scripts to match coding standard.
mtbc Mar 22, 2013
3fd4d40
Merge pull request #21 from mtbc/unicode-python
joshmoore Mar 25, 2013
8bfff04
Group thumbs by tag (only show each thumb once)
Apr 8, 2013
fa80748
Group thumbnail sets under FIRST Tag in tagIds
Apr 15, 2013
b015290
Fix left indent/alignment within images/dataset
Apr 22, 2013
c6e14d0
Don't show date-time stamps on Thumbnail Figure.
Apr 22, 2013
7d5c28b
Check for 'Big' image before OME-TIFF creation. See #10761
Apr 23, 2013
0ac142f
Merge pull request #28 from will-moore/OME-TIFF_Big_Images_10761
joshmoore Apr 24, 2013
53d23d1
Merge pull request #27 from will-moore/thumbnail_fig_tags
joshmoore Apr 24, 2013
1b5d622
Fix some minor typos.
ehrenfeu Jun 13, 2013
be7af70
Merge pull request #32 from imcf/dev_4_4
joshmoore Jun 14, 2013
2f9837c
Image.resize ANTIALIAS in ROI_Split_Figure. See #11267
Jul 12, 2013
314b090
Batch_Image_Export 'Zoom' param. See #11268
Jul 12, 2013
d5ea9cd
Merge pull request #34 from will-moore/zooming_figures_export
chris-allan Jul 18, 2013
8a2f53d
Initial commit
joshmoore Aug 1, 2013
c081e7d
Add example machine readable metadata file
manics Aug 2, 2013
2da5cb1
Convert float to int.
ximenesuk Aug 14, 2013
f033b35
Make a similar fix in Make_Movie
ximenesuk Aug 19, 2013
3d730d4
Add CONTRIBUTING.md
joshmoore Aug 21, 2013
951758d
Fix README
joshmoore Aug 21, 2013
e0f0e95
Point to sub-READMEs
joshmoore Aug 21, 2013
0af7b84
Update all sub READMEs
joshmoore Aug 21, 2013
6a1fb8a
Make clear in about.json that modifications are welcome.
joshmoore Aug 21, 2013
af84ba6
Merge README files
joshmoore Aug 21, 2013
36f7f79
Merge pull request #36 from ximenesuk/fix-canvasHeight
joshmoore Aug 21, 2013
c5ea43d
Add 'About' section from about.json
joshmoore Aug 22, 2013
0219526
Link to LICENSE
joshmoore Aug 22, 2013
5a95f23
Add misaka-based README parser
joshmoore Aug 22, 2013
1ba155e
Emphasize 'modify all' in About
joshmoore Aug 22, 2013
38ab6ff
Link to example script
joshmoore Aug 22, 2013
5e43c5b
Omit non 'About' level 6 items
joshmoore Aug 22, 2013
35dcd36
Use info/scripts URL
joshmoore Aug 22, 2013
fe86099
Minor markup improvements
joshmoore Aug 22, 2013
e3fbbac
Add fork link
joshmoore Aug 22, 2013
edd0162
Change to YOUR_SCRIPTS
joshmoore Aug 22, 2013
78530ff
Cleanup instructions
joshmoore Aug 22, 2013
333c0c3
Add developer link
joshmoore Aug 22, 2013
661652c
Drop https
joshmoore Aug 22, 2013
cdbb0a7
Remove introduction sentence
joshmoore Aug 22, 2013
abc0f7e
Adding Processing sub dir
joshmoore Aug 22, 2013
aced2dd
Rename Example.py to Example.txt
joshmoore Aug 22, 2013
b262e7a
Merge 4.4 and 5.0
joshmoore Aug 27, 2013
74939dc
Channel_Offsets.py uses channelList from source image
Sep 9, 2013
8de72b4
Images_From_ROIs uses sourceImageId
Sep 9, 2013
49eab3c
Param paths validated with os.path.basename. See #11464
Sep 18, 2013
924f650
Merge pull request #39 from will-moore/script_paths_to_basename_11464
joshmoore Sep 19, 2013
116226b
Use param file names for naming original files
Sep 19, 2013
3284ddc
Add .travis.yml file running flake8 on the scripts
sbesson Sep 20, 2013
ed30762
Merge pull request #37 from will-moore/createImage_from_old_11426
joshmoore Sep 20, 2013
59ef6f2
Merge remote-tracking branch 'origin/dev_4_4' into travis
sbesson Sep 20, 2013
06cc8c7
Merge pull request #40 from will-moore/script_paths_to_basename_11464
joshmoore Sep 20, 2013
b759912
Fix flake9 output for Channel_Offsets script
sbesson Sep 20, 2013
05bd824
Fix triple-quoted string
sbesson Sep 20, 2013
9944473
Fix flake8 output for Combine_Images script
sbesson Sep 20, 2013
13a4325
Fix flake8 output for Dataset_To_Plate script
sbesson Sep 20, 2013
49156b9
Fix flake8 output for Images_From_ROIs script
sbesson Sep 20, 2013
1186125
Fix flake8 output for FLIM_initialise script
sbesson Sep 20, 2013
0301b2b
Fix flake8 output for Populate_ROI.py script
sbesson Sep 20, 2013
c1d10db
Fix flake8 output for Thumbnail_Figure.py script
sbesson Sep 20, 2013
08be3eb
Fix flake8 output for Split_View_Figure.py script
sbesson Sep 20, 2013
7596842
Fix flake8 output for ROI_Split_Figure.py script
sbesson Sep 20, 2013
bce8546
Fix flake8 output for Movie_ROI_Figure.py script
sbesson Sep 20, 2013
b8cb67b
Fix flake8 output for Movie_Figure.py script
sbesson Sep 20, 2013
892f588
Fix flake8 output for Make_Movie.py
sbesson Sep 21, 2013
8b80623
Fix flake8 output for Batch_Image_Export.py
sbesson Sep 21, 2013
a641a2a
Fix flake8 output for Plot_Profile.py
sbesson Sep 21, 2013
7541804
Fix flake8 output for Kymograph_Analysis.py
sbesson Sep 21, 2013
8eea266
Fix flake8 output for Kymograph.py
sbesson Sep 21, 2013
5bb48e2
Review import of omero.constants across the board
sbesson Sep 21, 2013
d53d073
Merge remote-tracking branch 'origin/dev_4_4' into travis
sbesson Sep 21, 2013
24c96cb
Fix undefined name 'fig' warning from flake8
sbesson Sep 21, 2013
10f2427
Fix imports
sbesson Sep 22, 2013
4877a51
Fix ProjectionType import
sbesson Sep 22, 2013
cbbf9e7
Fix ProjectionType redefinition
sbesson Sep 22, 2013
01634e1
Install flake8 as part of the install step of Travis
sbesson Sep 23, 2013
b0c3428
Run flake8 in verbose mode
sbesson Sep 23, 2013
b601e79
Fix getLabels when using image names as the label
sbesson Sep 23, 2013
1a85b96
Merge pull request #41 from sbesson/travis
joshmoore Sep 25, 2013
79e4671
Remove empty directories
joshmoore Sep 26, 2013
5474257
Add hcs_scripts info
joshmoore Sep 26, 2013
41e5af9
Clarify directory usage
joshmoore Sep 26, 2013
d30b357
Add simple flake8 travis file
joshmoore Sep 26, 2013
007d3e4
Minor fixes
joshmoore Sep 26, 2013
84ba17e
Migrate directory listing from omero-user-scripts
joshmoore Sep 26, 2013
448b2a5
Rename to README.md
joshmoore Sep 26, 2013
9ebcda3
Remove explicit directory listing
joshmoore Sep 26, 2013
5c004c4
Merge pull request #3 from joshmoore/dir_cleanup
joshmoore Sep 26, 2013
b2d61c8
Merge pull request #4 from joshmoore/enable_travis
joshmoore Sep 26, 2013
cb67f61
Don't allow jpeg export of Big images
Jun 3, 2013
c59a4ed
Fix syntax errors
Jun 4, 2013
434ab6f
Combine_Images uses unwrap=True for params See #11473
Sep 26, 2013
27c071c
Remove they've and simplify descriptions
joshmoore Sep 27, 2013
38a0c46
util_scripts clarification
joshmoore Sep 27, 2013
7f5d0f4
print message
Sep 27, 2013
a4c2d67
Merge pull request #45 from will-moore/export_Big_Images_as_jpeg_1084…
joshmoore Sep 30, 2013
ba3501a
Merge pull request #47 from joshmoore/scripts_readme
joshmoore Sep 30, 2013
c82eda3
Merge pull request #48 from will-moore/Combine_Images_param_unwrap_11473
joshmoore Sep 30, 2013
d11a7e8
Fix PEP8 errors (line length & whitespace)
Sep 30, 2013
047995f
Merge pull request #49 from will-moore/export_Big_Images_as_jpeg_1084…
joshmoore Sep 30, 2013
0766dc1
Separate installation into two distinct sections
chris-allan Oct 10, 2013
a058493
Make (3) more readable
chris-allan Oct 10, 2013
bea2d98
Revert "Make (3) more readable"
chris-allan Oct 10, 2013
2bbf9f3
Add some more verbiage to (3)
chris-allan Oct 10, 2013
15c5bbb
Add an upgrading section
chris-allan Oct 10, 2013
f5f1ff2
Be a bit more thorough with explaining directory names
chris-allan Oct 10, 2013
a536380
Merge pull request #5 from chris-allan/install-separation
jburel Oct 18, 2013
2303a45
Merge tag 'v.4.4.9'
sbesson Nov 29, 2013
0241823
Exclude datasets containing images linked to wells
sbesson Dec 19, 2013
d83d18a
Prevent ZeroDivisionError on sizeT=1
joshmoore Nov 26, 2013
947f084
Ignore images where sizeT = 1
Dec 4, 2013
97e4ec1
Handle dataset is None (orphaned image)
Dec 4, 2013
82653c2
Fixing long line flake8 issue
Dec 5, 2013
bef5c0c
Merge pull request #58 from will-moore/1822-script-param-fix_dev_4_4
joshmoore Jan 7, 2014
82a400e
Query the count of wells linked to images to filter out datasets
sbesson Jan 14, 2014
eebac8b
Merge tag 'v.4.4.10'
sbesson Jan 15, 2014
2c141af
Use omero.sys.ParametersI rather than omero.sys.Parameters
sbesson Jan 16, 2014
7d278e9
Use omero.sys.ParameterI addIds() method
sbesson Jan 16, 2014
cab31dc
Fix flake8 output
sbesson Jan 16, 2014
d2b3bd8
Merge pull request #57 from sbesson/11848_datasettoplate
joshmoore Jan 21, 2014
c67d193
Use fromstring() instead of fromarray()
manics Jan 27, 2014
12cb664
Merge pull request #63 from manics/rebased/dev_5_0/pil_16bit-11912
joshmoore Jan 29, 2014
5995a5b
Drop --use-mirrors from .travis.yml
sbesson Feb 4, 2014
dcca774
Drop --use-mirrors from .travis.yml
sbesson Feb 4, 2014
c0916f6
Merge pull request #64 from sbesson/travis_pyip
joshmoore Feb 4, 2014
c13bcb3
Merge pull request #8 from sbesson/travis_pypi
joshmoore Feb 4, 2014
dbf16a6
Add Example.txt to the files checked by Travis flake8 operation
sbesson Feb 20, 2014
17be356
Fix syntax error in example.
ehrenfeu Feb 20, 2014
ad4c1ac
Flake8 the provided Example script
sbesson Feb 20, 2014
c94cb53
Merge pull request #10 from sbesson/travis
joshmoore Feb 23, 2014
af769f0
Kymograph_Analysis creates single csv. See #11909
Jan 16, 2014
e117442
Attach Kymograph csv to all Images
Jan 24, 2014
a43154c
Remove commented-out code from Kymograph Analysis
Jan 28, 2014
9702f2d
Remove commented-out line from Kymograph Analysis
Feb 26, 2014
d9b2af5
Merge pull request #68 from will-moore/rebased/dev_5_0/kymograph_anal…
joshmoore Mar 14, 2014
9f37109
Add image Name and Avg Speed to Kymograph csv
Mar 12, 2014
c39549f
Kymographs named origImage_kymograph
Mar 12, 2014
31d3c3c
Fix scripts to comply with PEP8 1.5.0
sbesson Mar 26, 2014
e052518
Fix commented blocks indentation
sbesson Mar 27, 2014
6cc0a0b
Merge pull request #72 from sbesson/pep8_1.5.0
sbesson Mar 27, 2014
64097bb
Merge branch 'master' into 'v.5.0.0'
sbesson Apr 9, 2014
8bfd38d
Merge pull request #71 from will-moore/rebased/dev_5_0/kymograph_anal…
joshmoore Apr 10, 2014
dcb056d
Merge tag 'v.5.0.1'
sbesson Apr 10, 2014
46b46f9
Allow passing extra channel rendering options to Make_Movie script (s…
cneves Apr 10, 2014
4aa040b
Small tweaks to make flake8 happy
cneves Apr 10, 2014
04114d2
Fix last flake8 warning
sbesson Mar 5, 2014
45dd75e
revert Channels arg to Make_Movie and add new ChannelsExtended
cneves Apr 10, 2014
c318111
Fixing check for valid channels to handle both Channels and ChannelsE…
cneves Apr 10, 2014
d1f6aae
Merge pull request #70 from cneves/ticket_5_0/12037_makemovie_channel…
joshmoore Apr 14, 2014
a232fcd
Make_Movie times in hrs:min:sec format. See #12254
will-moore May 8, 2014
30dbfa0
Remove unsupported system_site_packages: true for Python 2.6 under Tr…
sbesson May 9, 2014
d96c86d
Test scripts in multiple Python environments
sbesson May 9, 2014
6db9e39
Merge pull request #78 from sbesson/travis_fix
joshmoore May 12, 2014
80f1ec1
Merge pull request #77 from will-moore/Make_Movie_format_time_12254
joshmoore May 12, 2014
3f0daf7
Make use of core omero.util.script_utils.parseInputs() (issue #2439)
carandraug May 5, 2014
520a3fb
Replace `omero.util.script_utils.parseInputs()` with `BaseClient.getI…
carandraug May 9, 2014
24ddcca
Removing unused 'unwrap' imports
will-moore May 15, 2014
e683417
Merge pull request #82 from will-moore/getInputs_all_scripts
sbesson May 16, 2014
51091ce
Bump copyright headers
sbesson May 16, 2014
dde2482
Merge pull request #83 from sbesson/copyright_bump
joshmoore May 16, 2014
907991d
Merge tag 'v.5.0.2'
sbesson May 28, 2014
80849df
Update batch image export tutorial link
Jun 30, 2014
6d2820f
Merge pull request #86 from sbesson/rebased/dev_5_0/patch-1
joshmoore Jul 2, 2014
02b7dab
Apply rendering settings from source image.
jburel Jul 2, 2014
3126213
Usage ref to updateService.
jburel Jul 2, 2014
df1314c
Reformat code.
jburel Jul 2, 2014
d7e31d5
Merge pull request #87 from jburel/image-from-roi
joshmoore Jul 3, 2014
d65a902
Avoid division by 0.
Jul 8, 2014
ad06908
Merge pull request #89 from bpindelski/divnull
joshmoore Jul 16, 2014
ad8404d
Merge tag 'v.5.0.3'
sbesson Aug 6, 2014
e5db68e
Update script help links to point at help.openmicroscopy.org
sbesson Aug 29, 2014
2ff4a03
Fix help link
sbesson Aug 29, 2014
8c1d118
Merge pull request #92 from sbesson/script_links
sbesson Sep 1, 2014
32908b5
Merge tag 'v.5.0.4'
sbesson Sep 2, 2014
69ff30a
Fix Travis script
sbesson Jan 20, 2015
302deac
Merge pull request #11 from sbesson/travis_fix
joshmoore Jan 20, 2015
21f4842
Movies saved with specified filename
will-moore Jan 5, 2015
f42ca7f
Merge pull request #96 from will-moore/rebased/dev_5_0/make_movie_fil…
joshmoore Jan 29, 2015
4817d1b
Merge tag 'v.5.0.7'
sbesson Feb 4, 2015
7ec7883
Merge remote-tracking branch 'origin/master' into tmp
sbesson Aug 3, 2015
a10e637
Merge tag 'v5.1.2'
sbesson Aug 3, 2015
0d6212a
Merge remote-tracking branch 'origin/master' into tmp
sbesson Nov 3, 2015
f557641
Update docs URL in README
Dec 5, 2017
8c3d588
Update python for travis
Dec 5, 2017
cb4f07f
Merge pull request #13 from hflynn/patch-2
sbesson Dec 5, 2017
6f8a8db
Initial commit for add / remove scripts
Jan 11, 2018
51e6aa9
Updated the readme
Jan 11, 2018
7edda21
Update README.md
evenhuis Jan 12, 2018
1b4e535
Update README.md
evenhuis Jan 12, 2018
33ab100
Update README.md
evenhuis Jan 12, 2018
956f147
Update README.md
evenhuis Jan 12, 2018
384d8bd
First attempt at csv KV data
Jan 30, 2018
e907420
Merge branch 'master' of https://github.com/evenhuis/omero-user-scripts
Jan 30, 2018
624ce0b
Update README.md
evenhuis Jan 30, 2018
6d97df1
cleaned up key-val adding
Jan 31, 2018
a09a3c9
Merge branch 'master' of https://github.com/evenhuis/omero-user-scripts
Jan 31, 2018
569113e
initial commit of Create_Metadata_from_csv.py
Feb 2, 2018
07d881a
changed name
Feb 2, 2018
5e9c8a4
renamed add_key_val to reflect filename focus
Feb 5, 2018
fabbe00
Added KV from description
evenhuis Mar 5, 2018
defe49e
split description up
evenhuis Mar 9, 2018
c87cbdc
added command line download
evenhuis Mar 29, 2018
19792e3
Added the csv scripts
evenhuis Jun 3, 2018
73657c2
Add local download script
evenhuis Jun 3, 2018
9ddf0c4
fixed up mistake in writing csv file:
evenhuis Jun 26, 2018
d531da5
added 5.2 version of script
evenhuis Jul 5, 2018
ab7ca89
Added example Parse_OMERO_Properties.py
evenhuis Jul 5, 2018
00f1a58
added install notes
evenhuis Jul 5, 2018
68e2336
Update README.md
evenhuis Jul 5, 2018
c40c362
corrected path
evenhuis Jul 5, 2018
fdbd7af
Merge branch 'master' of https://github.com/evenhuis/omero-user-scripts
evenhuis Jul 5, 2018
ff5b057
remove space in code block
evenhuis Jul 5, 2018
12749f9
removeed tabs
evenhuis Jul 5, 2018
ebbbe99
fixed some styling, added env vars, commented readme
Jul 11, 2018
39d6494
removed unused file
Jul 11, 2018
da48503
updated readme
Jul 11, 2018
d6eedae
Merge pull request #1 from moisbo/master
evenhuis Jul 12, 2018
2df0858
added more docs
evenhuis Sep 28, 2018
ead0fbb
Merge branch 'master' of https://github.com/evenhuis/omero-user-scripts
evenhuis Sep 28, 2018
f1e734b
Update README.md
evenhuis Sep 28, 2018
0c77bf5
Update README.md
evenhuis Sep 28, 2018
a34addc
Update README.md
evenhuis Sep 28, 2018
62e615f
Update README.md
evenhuis Sep 28, 2018
420dea2
Fixing exception syntax.
CFGrote May 20, 2020
850d6d5
iteritems() -> items(), properly raise exception.
CFGrote May 20, 2020
85011fd
Unset hardcoded namespace
CFGrote May 20, 2020
92dee03
Fixing Remover.
CFGrote May 20, 2020
76d0b00
fix namespace.
CFGrote May 20, 2020
6ef6806
'iteritems->items', 'Exception, ex -> Exception as ex' in all scripts…
CFGrote May 20, 2020
767e7a4
Fixing print statements -> function.
CFGrote May 20, 2020
63204d7
More fixes: print.
CFGrote May 20, 2020
f6a179d
Fixing prints.
CFGrote May 20, 2020
9a9da94
Remove old scripts and rename.
CFGrote May 20, 2020
abea664
Putting the scripts into top level dir.
CFGrote May 20, 2020
6a041cb
rename again.
CFGrote May 20, 2020
beec089
Merge pull request #1 from mpievolbio-scicomp/fixes
CFGrote Apr 19, 2021
10d69e5
Update README.md
CFGrote Apr 19, 2021
5be2720
Update README.md
CFGrote Apr 19, 2021
f3fb6b1
Added installation information.
Apr 19, 2021
cb88086
Update README.md
Dec 17, 2021
0f98504
Merge pull request #2 from mpievolbio-scicomp/master
evenhuis Dec 20, 2021
ad62ce4
Update readme
CFGrote Dec 21, 2021
c3c79f5
Remove user-scripts specific files
joshmoore Jan 6, 2022
a793ce3
Rename according to https://github.com/ome/omero-scripts/pull/191
joshmoore Jan 6, 2022
184d16b
Cleanup method names
CFGrote Jan 6, 2022
436cb12
Merge 'ometa/rename' into ometa
joshmoore Jan 6, 2022
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