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Cannot find HCS well on Windows #323

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ziw-liu opened this issue Nov 2, 2023 · 2 comments
Closed

Cannot find HCS well on Windows #323

ziw-liu opened this issue Nov 2, 2023 · 2 comments

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@ziw-liu
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ziw-liu commented Nov 2, 2023

As of v0.8.2, ome-zarr-py cannot read HCS dataset stored on the local disk of a Window PC:

>>> from ome_zarr.io import parse_url
>>> from ome_zarr.reader import Reader
>>> reader = Reader(parse_url("20200812-CardiomyocyteDifferentiation14-Cycle1.zarr"))
>>> next(reader())
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "C:\...\lib\site-packages\ome_zarr\reader.py", line 621, in __call__
    node = Node(self.zarr, self)
  File "C:\...\lib\site-packages\ome_zarr\reader.py", line 58, in __init__
    self.specs.append(Plate(self))
  File "C:\...\lib\site-packages\ome_zarr\reader.py", line 473, in __init__
    self.get_pyramid_lazy(node)
  File "C:\...\lib\site-packages\ome_zarr\reader.py", line 498, in get_pyramid_lazy
    raise Exception("Could not find first well")
Exception: Could not find first well

#322 seems to fix this too.

@will-moore
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#322 has been merged and released now. Happy to close this?

@ziw-liu
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ziw-liu commented Nov 16, 2023

#322 has been merged and released now. Happy to close this?

@will-moore Just tested that it works now. Thanks!

@ziw-liu ziw-liu closed this as completed Nov 16, 2023
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