Luscombe unit's Oikopleura genome assemblies

List of github links for Oikopleura genome assemblies.

North Pacific

Japan

• Osaka O10: https://github.com/oist/LuscombeU_O10_assembly
• Osaka OSKA2016v1.9: https://github.com/oist/LuscombeU_OSKA2016_rescaffolding
• Nagasaki NAG1: https://github.com/oist/LuscombeU_NAG1_assembly
• Kagoshima Shib10: https://github.com/oist/LuscombeU_SHIB10_assembly
• Aomori AOM5: https://github.com/oist/LuscombeU_AOM5_assembly
• Aomori AOM10: https://github.com/oist/LuscombeU_AOM10_assembly
• Aomori AOM1: https://github.com/oist/LuscombeU_AOM1_assembly
• Osaka OSK42: https://github.com/oist/LuscombeU_OSK42_assembly
• Himeji HIM8: https://github.com/oist/LuscombeU_HIM8_assembly
• Osaka O9:
• Osaka O3:

USA

• Oregon ORE5:
• Alaska Ala_R77: https://github.com/oist/LuscombeU_Ala_R77_assembly

Europe

• Barcelona Bar2_p4: https://zenodo.org/records/12913342
• Barcelona Bar12: https://github.com/oist/LuscombeU_BAR12_assembly
• Barcelona Bar7:
• Barcelona BarYellow:

Ryukyu Islands

• Okinawa OKI2018_I69: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_907165135.1 (to which we incorrectly gave the ID OKI2018_I68)…
• Kume M3 (20190612_0517_KUM_M3, 16.6 Gbp, N50 21.7 kbp, contig assembly used in scrambling paper)
• Amami 15 (20190716_0606_AMA15 4.3 Gbp, N50 13.67 kbp)
• Okinawa M2F1 (trio binning)
• I25 (PacBio 20210317_Sequel2_I25)
• ITO41 (PacBio 20210317_Sequel2_ITO41)

Non O. dioica