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Technique example: data loader, R to ZIP #1423
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r to ZIP technique example
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Merge branch 'main' into allison/r-zip-loader
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clearer column names in prediction table
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only load individual files from ZIP, not entire archive in client
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Merge branch 'main' into allison/r-zip-loader
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Update examples/loader-r-to-zip/src/data/penguin-mlr.zip.R
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| .DS_Store | ||
| /dist/ | ||
| node_modules/ | ||
| yarn-error.log | ||
| .Rhistory | ||
| .RData |
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| [Framework examples →](../) | ||
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| # R data loader to generate a ZIP archive | ||
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| View live: <https://observablehq.observablehq.cloud/framework-example-loader-r-to-zip/> | ||
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| This Observable Framework example demonstrates how to write an R data loader that accesses penguin body size measurements, performs multiple linear regression, then outputs model estimates and predictions as two separate CSV files in a ZIP archive. | ||
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| The data loader lives in [`src/data/penguin-mlr.zip.R`](./src/data/penguin-mlr.zip.R). |
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| export default { | ||
| root: "src" | ||
| }; |
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| { | ||
| "type": "module", | ||
| "private": true, | ||
| "scripts": { | ||
| "clean": "rimraf src/.observablehq/cache", | ||
| "build": "rimraf dist && observable build", | ||
| "dev": "observable preview", | ||
| "deploy": "observable deploy", | ||
| "observable": "observable" | ||
| }, | ||
| "dependencies": { | ||
| "@observablehq/framework": "^1.7.0" | ||
| }, | ||
| "devDependencies": { | ||
| "rimraf": "^5.0.5" | ||
| }, | ||
| "engines": { | ||
| "node": ">=18" | ||
| } | ||
| } |
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| /.observablehq/cache/ |
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| # Attach required packages (must be installed) | ||
| library(readr) | ||
| library(tidyr) | ||
| library(dplyr) | ||
| library(broom) | ||
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| # Data access, wrangling and analysis | ||
| penguins <- read_csv("src/data/penguins.csv") |> | ||
| drop_na(body_mass_g, species, sex, flipper_length_mm, culmen_depth_mm) | ||
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| penguins_mlr <- lm(body_mass_g ~ species + sex + flipper_length_mm + culmen_depth_mm, data = penguins) | ||
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| mlr_est <- tidy(penguins_mlr) | ||
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| mlr_fit <- penguins |> | ||
| mutate( | ||
| predicted_mass = penguins_mlr$fitted.values, | ||
| residual = penguins_mlr$residuals | ||
| ) | ||
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| # Write the data frames as CSVs to a temporary directory | ||
| setwd(tempdir()) | ||
| write_csv(mlr_est, "estimates.csv") | ||
| write_csv(mlr_fit, "predictions.csv") | ||
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| # Zip the contents of the temporary directory | ||
| system("zip - -r .") | ||
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