This repo contains code for algorithms and experiments from the paper
Learning Resolution Parameters for Graph Clustering
Nate Veldt, David Gleich, Anthony Wirth Proceedings of the 29th International Conference on World Wide Web.
arXiv preprint: https://arxiv.org/abs/1903.05246
The majority of the code is in the Julia progamming language (version 1.0). Some of the code is written in Matlab, as some of the outside software is written in Matlab.
Software from outside projects is included in the include folder.
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LFR Benchmark graph generator: Package 1 from https://sites.google.com/site/santofortunato/inthepress2
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GenLouvain Algorithm:
Lucas G. S. Jeub, Marya Bazzi, Inderjit S. Jutla, and Peter J. Mucha,
"A generalized Louvain method for community detection implemented in MATLAB," http://netwiki.amath.unc.edu/GenLouvain (2011-2016). -
For NMI scores:
https://www.mathworks.com/matlabcentral/fileexchange/29047-normalized-mutual-information
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For ARI scores:
https://www.mathworks.com/matlabcentral/fileexchange/49908-adjusted-rand-index
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LambdaCC algorithms: https://github.com/nveldt/LamCC
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FlowSeed (local graph clustering): https://github.com/nveldt/FlowSeed
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Metric Optimization (solving the LambdaCC LP relaxation using projection methods): https://github.com/nveldt/MetricOptimization
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Parallel Metric Optimization (solving the LP relaxation in parallel): https://github.com/nveldt/ParallelDykstras
Some routines require an academic license for Gurobi (e.g. the functions in GurobiCC-1.0.jl for solving the correlation clustering linear programming relaxation).
For the LambdaCC objective, there are several versions that can be run depending on a few choices:
- Two versions of LambdaCC: Standard and Degree-weighted
- Three solvers for the underlying LP relaxation: Gurobi optimization software (more accurate solutions, but won't work for large problems), Serial Projection methods (approximate solutions, but more memory efficient than Gurobi), Parallel Projection methods (threaded version of serial projection methods).
An example for running the parameter fitness function in different cases is given in Test_LamCC_MinPFF-1.0.jl
To see how to minimize the local parameter fitness function in Test_FlowSeed_PFF.jl.
Code and instructions for reproducing each experiment from the paper are included in separate folders.