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Merge development dev bbob noisy#2239

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lorenzo-consoli wants to merge 64 commits intodevelopmentnumbbo/coco:developmentfrom merge-development-dev-bbob-noisynumbbo/coco:merge-development-dev-bbob-noisyCopy head branch name to clipboard

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Commits on Aug 1, 2023

• First Commit working on the bbob-noisy suite

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• First Commit working on the bbob-noisy suite

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Commits on Aug 2, 2023

• Writing getter functions for random_seed, distribution_theta and last_noise_value and added coco_problem_sample_gaussian function to generate normal noises.

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• Defining the functions for the uniform noise model and implementing the sphere with uniform noise

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• Implementing the functions for sampling following the cauchy noise model

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Commits on Aug 4, 2023

• Changing approach

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• Implementing the bbob noisy wrappers around the existing functions

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Commits on Aug 5, 2023

• Corrected a few bugs I noticed from the previous commit and added the bbob_noisy.c file containing the definition of the functions needed to create and allocate the bbob-noisy test suite

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• Testing the c code build and running the first (unsuccessfull) regression test.

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Commits on Aug 7, 2023

• Array initialization was wrong

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Commits on Aug 9, 2023

• Need to handle the schaffers and gallagher functions in a particular way

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Commits on Aug 12, 2023

• Generating data for regression test for the bbob-noisy suite

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• Merge pull request #2212 from FMGS666/master

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Commits on Aug 24, 2023

• Preparing code for regression testing

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Commits on Aug 29, 2023

• Proceeding with the regression test

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Commits on Aug 30, 2023

• Having problems with Ellipsoid

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• Solved issue with Griewank-Rosenbrock and Ellipsoid function

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Commits on Sep 6, 2023

• Regression test completed

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• Cleaning the code

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Commits on Sep 7, 2023

• Regression test passed (Hopefully)

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• Minor mistake in commit

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• Still some minor fixes to the commit

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• Problem with the python interface.

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• Still some minor fixes to the commit (python interface)

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• Cleaning the code

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Commits on Sep 8, 2023

• Error in the file testing the bbob-noisy suite against the legacy code

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Commits on Sep 18, 2023

• Updating comments to the code

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Commits on Sep 23, 2023

• Started to play around with the pycma package and cleaned a bit the src code by writing functions for allocating the distributon theta array for each distribution

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Commits on Sep 26, 2023

• Fixing issue with indexing of problems, function and other stuff

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Commits on Oct 3, 2023

• Adding best_decision_vector to the python interface

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Commits on Oct 9, 2023

• Cleaning up before PR, Removing unnecessary files

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Commits on Oct 17, 2023

• This should be the "final" commit, in the sense that it is the first commit where the results obtained

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Commits on Oct 18, 2023

• Hopefully this is the right time, but I guess we'll have to see the results of the tests done at commit time

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• Removing printf statemets after debugging

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• Passing structures as void *

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Commits on Oct 24, 2023

• Changing the allocation of the noisy problems

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• removing python interface to best values/parameters

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Commits on Nov 9, 2023

• Creating instrumental branch to safely merge the dev-bbob-noisy branch with the development branch

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• Fixing conflicts

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• The signature of the coco_suite_allocate function changed, need to update it on the suite_bbob_noisy.c file as well, I hope this is the only reason why the tests have not passed in the first commit…

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• Updated the function signature but forgot to do so for its call

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Commits on Nov 14, 2023

• Merge branch 'development' into merge-development-dev-bbob-noisy

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Commits on Nov 22, 2023

• Patching after review, still need to clean the history and figure out why it is not building under windows

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• Is this the problem because it is not building under windows??? only time will tell us

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• The error changed, now it's not building rust and the test that was not passing earlier is okay...

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• ok i may have figured it out...

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• ok i may have figured it out... NOOO

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• [build] Replace mention of do.py in fabricate

  

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• [build] Replace mention of do.py in postprocessing code

  

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• [doc] Add developer documentation

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• [doc] Update instructions for different dimensions

  

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• [doc] Update unit test README.md

  

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• fix initial solution proposals in mix-int case issue #2235

  

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• fix latex string with backslashes

  

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• fix open file not closing in cocopp.testbedsettings

  

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• improve error handling on missing data

  

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• print success of recovery after warning

  

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• pass raw string to re.compile to prevent warning

  

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• apply data filter to tarfile.extractall addressing issue #2244

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• Creating instrumental branch to safely merge the dev-bbob-noisy branch with the development branch

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• Implementing the bbob noisy wrappers around the existing functions

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• Adapting the code to the heavy refactoring of the last period

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• Not cheating anymore

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• Removing the file

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