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npy_1_7_deprecated_api.h:17:2: warning with do.py run-python #2029

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nikohansen opened this issue Oct 19, 2021 · 2 comments
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npy_1_7_deprecated_api.h:17:2: warning with do.py run-python #2029

nikohansen opened this issue Oct 19, 2021 · 2 comments
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nikohansen commented Oct 19, 2021 •
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I am printing the output of ./do.py run-python in line 146 of coco_utils.py on a Mac and wonder whether this warning

In file included from /Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:
/Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "

is relevant? Does it come from outdated COCO code or an outdated installation on the Mac?

This is the full output: 
(base) 14:38:11 0 2 coco% ./do.py run-python                                                                     [cwd: gitlab/paul/coco]
AML     ['code-experiments/src/coco_random.c', 'code-experiments/src/coco_suite.c', 'code-experiments/src/coco_observer.c', 'code-experiments/src/coco_archive.c', 'code-experiments/src/coco_runtime_c.c'] -> code-experiments/build/python/cython/coco.c
EXPAND  code-experiments/build/python/cython/coco.c.in to code-experiments/build/python/cython/coco.c
EXPAND  code-experiments/src/coco.h to code-experiments/build/python/cython/coco.h
COPY    code-experiments/src/bbob2009_testcases.txt -> code-experiments/build/python/bbob2009_testcases.txt
COPY    code-experiments/src/bbob2009_testcases2.txt -> code-experiments/build/python/bbob2009_testcases2.txt
COPY    code-experiments/build/python/README.md -> code-experiments/build/python/README.txt
EXPAND  code-experiments/build/python/setup.py.in to code-experiments/build/python/setup.py
PYTHON  setup.py install in code-experiments/build/python
NOTE: Using precompiled C file to build interface.
running install
running bdist_egg
running egg_info
writing cocoex.egg-info/PKG-INFO
writing dependency_links to cocoex.egg-info/dependency_links.txt
writing top-level names to cocoex.egg-info/top_level.txt
reading manifest file 'cocoex.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'cocoex.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.9-x86_64/egg
running install_lib
running build_py
running build_ext
building 'cocoex.interface' extension
x86_64-apple-darwin13.4.0-clang -fno-strict-aliasing -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -pipe -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION} -fdebug-prefix-map=/Users/hansen/opt/anaconda3=/usr/local/src/conda-prefix -flto -Wl,-export_dynamic -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/Users/hansen/opt/anaconda3/include/python3.7m -c cython/interface.c -o build/temp.macosx-10.9-x86_64-3.7/cython/interface.o
clang-4.0: warning: -Wl,-export_dynamic: 'linker' input unused [-Wunused-command-line-argument]
In file included from cython/interface.c:598:
In file included from /Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:
/Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
x86_64-apple-darwin13.4.0-clang -fno-strict-aliasing -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -pipe -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION} -fdebug-prefix-map=/Users/hansen/opt/anaconda3=/usr/local/src/conda-prefix -flto -Wl,-export_dynamic -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/hansen/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/Users/hansen/opt/anaconda3/include/python3.7m -c cython/coco.c -o build/temp.macosx-10.9-x86_64-3.7/cython/coco.o
clang-4.0: warning: -Wl,-export_dynamic: 'linker' input unused [-Wunused-command-line-argument]
code-experiments/src/suite_biobj_utilities.c:546:3: warning: code will never be executed [-Wunreachable-code]
  coco_error("suite_biobj_get_best_hyp_value(): unexpected exception");
  ^~~~~~~~~~
code-experiments/src/logger_biobj.c:218:10: warning: code will never be executed [-Wunreachable-code]
  (void) userdata; /* To silence the compiler */
         ^~~~~~~~
code-experiments/src/logger_biobj.c:237:10: warning: code will never be executed [-Wunreachable-code]
  (void) userdata; /* To silence the compiler */
         ^~~~~~~~
code-experiments/src/coco_archive.c:90:10: warning: code will never be executed [-Wunreachable-code]
  (void) userdata; /* To silence the compiler */
         ^~~~~~~~
4 warnings generated.
x86_64-apple-darwin13.4.0-clang -bundle -undefined dynamic_lookup -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/hansen/opt/anaconda3/lib -L/Users/hansen/opt/anaconda3/lib -flto -Wl,-export_dynamic -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/hansen/opt/anaconda3/lib -L/Users/hansen/opt/anaconda3/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -arch x86_64 build/temp.macosx-10.9-x86_64-3.7/cython/interface.o build/temp.macosx-10.9-x86_64-3.7/cython/coco.o -o build/lib.macosx-10.9-x86_64-3.7/cocoex/interface.cpython-37m-darwin.so
ld: warning: -pie being ignored. It is only used when linking a main executable
ld: warning: ignoring file /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib/libSystem.tbd, file was built for unsupported file format ( 0x2D 0x2D 0x2D 0x20 0x21 0x74 0x61 0x70 0x69 0x2D 0x74 0x62 0x64 0x0A 0x74 0x62 ) which is not the architecture being linked (x86_64): /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib/libSystem.tbd
creating build/bdist.macosx-10.9-x86_64/egg
creating build/bdist.macosx-10.9-x86_64/egg/cocoex
copying build/lib.macosx-10.9-x86_64-3.7/cocoex/__init__.py -> build/bdist.macosx-10.9-x86_64/egg/cocoex
copying build/lib.macosx-10.9-x86_64-3.7/cocoex/solvers.py -> build/bdist.macosx-10.9-x86_64/egg/cocoex
copying build/lib.macosx-10.9-x86_64-3.7/cocoex/exceptions.py -> build/bdist.macosx-10.9-x86_64/egg/cocoex
copying build/lib.macosx-10.9-x86_64-3.7/cocoex/utilities.py -> build/bdist.macosx-10.9-x86_64/egg/cocoex
copying build/lib.macosx-10.9-x86_64-3.7/cocoex/interface.cpython-37m-darwin.so -> build/bdist.macosx-10.9-x86_64/egg/cocoex
byte-compiling build/bdist.macosx-10.9-x86_64/egg/cocoex/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.macosx-10.9-x86_64/egg/cocoex/solvers.py to solvers.cpython-37.pyc
byte-compiling build/bdist.macosx-10.9-x86_64/egg/cocoex/exceptions.py to exceptions.cpython-37.pyc
byte-compiling build/bdist.macosx-10.9-x86_64/egg/cocoex/utilities.py to utilities.cpython-37.pyc
creating stub loader for cocoex/interface.cpython-37m-darwin.so
byte-compiling build/bdist.macosx-10.9-x86_64/egg/cocoex/interface.py to interface.cpython-37.pyc
creating build/bdist.macosx-10.9-x86_64/egg/EGG-INFO
copying cocoex.egg-info/PKG-INFO -> build/bdist.macosx-10.9-x86_64/egg/EGG-INFO
copying cocoex.egg-info/SOURCES.txt -> build/bdist.macosx-10.9-x86_64/egg/EGG-INFO
copying cocoex.egg-info/dependency_links.txt -> build/bdist.macosx-10.9-x86_64/egg/EGG-INFO
copying cocoex.egg-info/top_level.txt -> build/bdist.macosx-10.9-x86_64/egg/EGG-INFO
writing build/bdist.macosx-10.9-x86_64/egg/EGG-INFO/native_libs.txt
zip_safe flag not set; analyzing archive contents...
cocoex.__pycache__.interface.cpython-37: module references __file__
creating 'dist/cocoex-2.3.3.103-py3.7-macosx-10.9-x86_64.egg' and adding 'build/bdist.macosx-10.9-x86_64/egg' to it
removing 'build/bdist.macosx-10.9-x86_64/egg' (and everything under it)
Processing cocoex-2.3.3.103-py3.7-macosx-10.9-x86_64.egg
creating /Users/hansen/opt/anaconda3/lib/python3.7/site-packages/cocoex-2.3.3.103-py3.7-macosx-10.9-x86_64.egg
Extracting cocoex-2.3.3.103-py3.7-macosx-10.9-x86_64.egg to /Users/hansen/opt/anaconda3/lib/python3.7/site-packages
Removing cocoex 2.4.1.1.2 from easy-install.pth file
Adding cocoex 2.3.3.103 to easy-install.pth file

Installed /Users/hansen/opt/anaconda3/lib/python3.7/site-packages/cocoex-2.3.3.103-py3.7-macosx-10.9-x86_64.egg

Processing dependencies for cocoex==2.3.3.103

Finished processing dependencies for cocoex==2.3.3.103


PYTHON  example_experiment.py bbob in code-experiments/build/python

COCO INFO: Results will be output to folder exdata/random_search_on_bbob_budget0002xD-003

Benchmarking solver '<function random_search' with budget=2*dimension on b'bbob' suite, Tue Oct 19 14:38:35 2021

Oct19 14h38:35, d=2, running: f001...............(15)  f002...............(15)  f003...............(15)  f004...............(15)  f005...............(15)  f006...............(15)  f007...............(15)  f008...............(15)  f009...............(15)  f010...............(15)  f011...............(15)  f012...............(15)  f013...............(15)  f014...............(15)  f015...............(15)  f016...............(15)  f017...............(15)  f018...............(15)  f019...............(15)  f020...............(15)  f021...............(15)  f022...............(15)  f023...............(15)  f024...............(15)

2-D done in 1.1e-04 seconds/evaluation


[...]

@nikohansen nikohansen changed the title npy_1_7_deprecated_api.h:17:2: warning with do.py run-python npy_1_7_deprecated_api.h:17:2: warning with do.py run-python Oct 19, 2021
ttusar added a commit that referenced this issue Oct 27, 2021
@ttusar
Addressing #2029 (unreachable code)
f60a2e6
ttusar added a commit that referenced this issue Oct 27, 2021
@ttusar
Addressing #2029 (unreachable code)
0767412
@ttusar
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ttusar commented Oct 27, 2021

BTW, this warning was already noted in issue #1861

@ttusar
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ttusar commented Oct 28, 2021

All the warnings from this issue have been resolved (in the development branch)

@ttusar ttusar closed this as completed Oct 28, 2021
nikohansen pushed a commit that referenced this issue Nov 25, 2021
@ttusar @paulduf
Addressing #2029 (unreachable code)
97f80d1
nikohansen pushed a commit that referenced this issue Nov 25, 2021
@ttusar @paulduf
Addressing #2029 (unreachable code)
2da5c27
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