New notebook with atl10 files coincident to the cryosat2 files #161
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| name: Test Notebooks | |
| on: | |
| pull_request: | |
| paths: | |
| - notebooks/** | |
| - binder/** | |
| - '.github/workflows/' | |
| types: [opened, synchronize] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| linux: | |
| name: Linux tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Install Conda environment with Micromamba" | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-env: true | |
| environment-file: binder/conda-linux-64.lock | |
| environment-name: nsidc-tutorials | |
| - name: "Verify micromamba" | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| jupyter kernelspec list | |
| which python | |
| conda list | sort | |
| - name: "Verify that libraries used in notebooks are present in the environment" | |
| shell: bash -l {0} | |
| run: | | |
| find notebooks -type f -iname \*.ipynb -not -path '*\.ipynb_checkpoints/*' -not -path '*/iceflow/*' | xargs -I % python .github/workflows/scan_notebooks.py -n % | |
| - name: "Setup Quarto" | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| # version: 1.1.251 | |
| version: 1.3.361 | |
| - name: "Execute notebooks with Quarto" | |
| env: | |
| EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }} | |
| EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD }} | |
| shell: bash -l {0} | |
| run: | | |
| find notebooks -type f -name "*.ipynb" -not -path '*\.ipynb_checkpoints/*' -not -path '*endered*' -not -path '*SnowEx*' | xargs -I F quarto render "F" --execute-daemon-restart | |
| win-osx: | |
| name: Runtime (${{ matrix.os }}, micromamba) | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["windows", "macos"] | |
| include: | |
| - os: windows | |
| environment-file: binder/conda-win-64.lock | |
| - os: macos | |
| environment-file: binder/conda-osx-64.lock | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: "Install Conda environment with Micromamba" | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-env: true | |
| environment-file: ${{ matrix.environment-file }} | |
| environment-name: nsidc-tutorials | |
| - name: "Verify micromamba" | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| jupyter kernelspec list | |
| printenv | sort |