VPR_MCMC - Viral Phylogeny Reconstruction with MCMC

Kotlin implementation of TCS algorithm. Implemented as a baseline solution for future expansion of the underlying approach.

References

1. Templeton, A. R., Crandall, K. A., & Sing, C. F. (1992). A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132(2), 619-633.
2. Clement, M. J., Snell, Q., Walker, P., Posada, D., & Crandall, K. A. (2002, April). TCS: estimating gene genealogies. In ipdps (Vol. 2, p. 184).