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[FIX] BET incorrect output paths #3214

Merged
merged 2 commits into from
Jun 2, 2020
Merged

[FIX] BET incorrect output paths #3214

merged 2 commits into from
Jun 2, 2020

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ZviBaratz
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@ZviBaratz ZviBaratz commented May 16, 2020

Added cwd keyword argument to _gen_fname() calls so that the returned output will reference the correct paths. This fixes #2916.

  • [V] I acknowledge that this contribution will be available under the Apache 2 license.

@ZviBaratz
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I forgot to mention - pytest fails 1 test unless the bids package is manually installed.

@satra
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satra commented May 16, 2020

thanks @ZviBaratz - this looks reasonable to me. the failures appear to be unrelated to this PR (linked to nilearn tests). @oesteban - do you want to take this opportunity to fix the other issue about lengths of paths?

@effigies
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effigies commented Jun 2, 2020

With no activity regarding the other issue, I'm inclined to merge this. Any objections?

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satra commented Jun 2, 2020

none from my side.

@effigies effigies merged commit 7c779ab into nipy:master Jun 2, 2020
@effigies effigies added this to the 1.5.0 milestone May 1, 2021
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Tiny BET configuration and output specification bugs
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