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Achievement: YOLOAchievement: StarstruckAchievement: QuickdrawAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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nilseling/README.md

My work focuses on single-cell, bioimage and spatial data analysis to understand immune-tumor interactions in various cancer types. I also build R/Bioconductor packages and workflows to standardize bioimage and spatial data analysis. You can see my main contributions on the BodenmillerGroup organisation.

GitHub statistics

Github stats

Ex-Package maintainer

Package Rank Build
cytomapper
imcRtools

Package contributor

Package Rank Build
cytoviewer
BASiCS
imcdatasets

Ex-Workflow maintainer

Workflow Build Website
IMCWorkflow https://bodenmillergroup.github.io/IMCWorkflow/
IMCDataAnalysis build https://github.com/BodenmillerGroup/IMCDataAnalysis

Analysis repositories

Repository Year
cytomapper_publication 2020
GammaDeltaTcells2018 2018
Spermatogenesis2018 2018
RegressionBASiCS2017 2017
ImmuneAging2017 2017
Platynereis2017 2017

Pinned

  1. BodenmillerGroup/cytomapper BodenmillerGroup/cytomapper Public

    R package for visualization of highly multiplexed imaging data

    R 32 8

  2. BodenmillerGroup/cytomapper_publication BodenmillerGroup/cytomapper_publication Public

    See static website at https://bodenmillergroup.github.io/cytomapper_publication/

    R 2 2

  3. Thesis Thesis Public

    Latex scripts to compile my PhD thesis

    TeX 7 2

  4. BodenmillerGroup/imcRtools BodenmillerGroup/imcRtools Public

    An R package for handling and analysing imaging mass cytometry data

    R 20 9

  5. BodenmillerGroup/IMCDataAnalysis BodenmillerGroup/IMCDataAnalysis Public

    R based workflow for multiplexed imaging data

    HTML 27 10

  6. BodenmillerGroup/demos BodenmillerGroup/demos Public

    Repository containing demonstrations of lab software

    5 1