My work focuses on single-cell, bioimage and spatial data analysis to understand immune-tumor interactions in various cancer types. I also build R/Bioconductor packages and workflows to standardize bioimage and spatial data analysis. You can see my main contributions on the BodenmillerGroup organisation.
Package | Rank | Build |
---|---|---|
cytomapper | ||
imcRtools |
Package | Rank | Build |
---|---|---|
cytoviewer | ||
BASiCS | ||
imcdatasets |
Workflow | Build | Website |
---|---|---|
IMCWorkflow | https://bodenmillergroup.github.io/IMCWorkflow/ | |
IMCDataAnalysis | https://github.com/BodenmillerGroup/IMCDataAnalysis |
Repository | Year |
---|---|
cytomapper_publication | 2020 |
GammaDeltaTcells2018 | 2018 |
Spermatogenesis2018 | 2018 |
RegressionBASiCS2017 | 2017 |
ImmuneAging2017 | 2017 |
Platynereis2017 | 2017 |