NGS Data Analysis Course

Day 1

Introduction to Linux systems

• Slides

Introduction to NGS technologies

• Slides

Quality control for NGS raw data

• Slides - Practical exercise - Data

Mapping reads to a reference genome

• Slides - Practical exercise

Day 2

Visualization of NGS data

• Slides || Practical exercise 1 || Practical exercise 2

Variant calling

• Slides || Practical exercise 1 || Practical exercise 2 || Practical exercise 3

Variant annotation

• Slides || Practical exercise 1

Day 3

Association studies

RNA-Seq data processing

RNA-Seq data analysis

Functional analysis