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Merge pull request #31 from nf-osi/allaway-patch-3
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Remove MTA Required from data model
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@allaway
allaway authored Jun 16, 2023
2 parents 05b9790 + a7ed226 commit a0c627c
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Showing 2 changed files with 67 additions and 82 deletions.
146 changes: 66 additions & 80 deletions nf-research-tools.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -2143,9 +2143,6 @@
{
"@id": "bts:description"
},
{
"@id": "bts:mTARequired"
},
{
"@id": "bts:usageRequirements"
},
Expand Down Expand Up @@ -2270,32 +2267,6 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:mTARequired",
"@type": "rdf:Property",
"rdfs:comment": "Whether a Material Transfer Agreement is required or not. ",
"rdfs:label": "mTARequired",
"schema:domainIncludes": {
"@id": "bts:Resource"
},
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"schema:rangeIncludes": [
{
"@id": "bts:Yes"
},
{
"@id": "bts:No"
},
{
"@id": "bts:Unknown"
}
],
"sms:displayName": "MTA Required",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:usageRequirements",
"@type": "rdf:Property",
Expand Down Expand Up @@ -6172,6 +6143,21 @@
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:mTARequired",
"@type": "rdf:Property",
"rdfs:comment": "TBD",
"rdfs:label": "mTARequired",
"schema:domainIncludes": {
"@id": "bts:Resource"
},
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "MTA Required",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:insertEntrezId",
"@type": "rdf:Property",
Expand Down Expand Up @@ -6337,57 +6323,6 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Yes",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Yes",
"rdfs:subClassOf": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "yes",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:No",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "No",
"rdfs:subClassOf": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "no",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Unknown",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Unknown",
"rdfs:subClassOf": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "unknown",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Non-commercialuseonly",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -6541,6 +6476,23 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Unknown",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Unknown",
"rdfs:subClassOf": [
{
"@id": "bts:Resource"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "unknown",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Homosapiens",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -6677,6 +6629,40 @@
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:Yes",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "Yes",
"rdfs:subClassOf": [
{
"@id": "bts:GeneticReagent"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "Yes",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:No",
"@type": "rdfs:Class",
"rdfs:comment": "TBD",
"rdfs:label": "No",
"rdfs:subClassOf": [
{
"@id": "bts:GeneticReagent"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "No",
"sms:required": "sms:false",
"sms:validationRules": []
},
{
"@id": "bts:MammalianExpression",
"@type": "rdfs:Class",
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3 changes: 1 addition & 2 deletions nf_research_tools.rdb.model.csv
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Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
Attribute,Description,Valid Values,DependsOn,Required,Source,Parent,Properties,DependsOn Component,Validation Rules,
Component,Type of submitted information.,,,TRUE,,,,,,
Resource,"A tool used in the research process (i.e. animal model, cell line, etc.)",,"Component, Resource_id, Genetic Reagent_id, Antibody_id, Cell Line_id, Animal Model_id, rrid, Resource Name, Synonyms, Resource Type, Description, MTA Required, Usage Requirements, How to Acquire, Date Added, Date Modified",FALSE,,Individual_Resource,"Resource_id, Genetic Reagent_id, Antibody_id, Cell Line_id, Animal Model_id, rrid, Resource Name, Synonyms, Resource Type, Description, MTA Required, Usage Requirements, How to Acquire, Date Added, Date Modified","Genetic Reagent, Antibody, Cell Line, Animal Model",,
Resource,"A tool used in the research process (i.e. animal model, cell line, etc.)",,"Component, Resource_id, Genetic Reagent_id, Antibody_id, Cell Line_id, Animal Model_id, rrid, Resource Name, Synonyms, Resource Type, Description, Usage Requirements, How to Acquire, Date Added, Date Modified",FALSE,,Individual_Resource,"Resource_id, Genetic Reagent_id, Antibody_id, Cell Line_id, Animal Model_id, rrid, Resource Name, Synonyms, Resource Type, Description, MTA Required, Usage Requirements, How to Acquire, Date Added, Date Modified","Genetic Reagent, Antibody, Cell Line, Animal Model",,
Resource_id,A unique identifier for the resource.,,,TRUE,,Resource,,,,
rrid,"The RRID, a standard resource identifier that will facilitate interoperability with other databases, and is an increasingly-used identifier for publications https://scicrunch.org/resources if available",,,FALSE,,Resource,,,,
Resource Name,The “canonical” name of the resource,,,TRUE,,Resource,,,,
Synonyms,Synonyms of the resource,,,FALSE,,Resource,,,list,
Resource Type,"Type of resource. (e.g. animal model, antibody, plasmid, etc.)","Animal Model, Cell Line, Antibody, Genetic Reagent, Biobank",,TRUE,,Resource,,,,
Description,Free text description/summary/overview/purpose of the resource.,,,FALSE,,Resource,,,,
MTA Required,Whether a Material Transfer Agreement is required or not. ,"yes, no, unknown",,FALSE,,Resource,,,,
Usage Requirements,Any known restrictions on use of the resource. ,"non-commercial use only, re-distribution not permitted, generation of germ line transmitting chimeras not permitted, creation of functional gametes not permitted, generation of interspecies chimeras not permitted, human cloning not permitted, cannot be used for treatment purposes, IRB documentation required, special licencing restrictions (see vendor for more information), unknown",,FALSE,,Resource,,,list,
How to Acquire,How to acquire a particular resource. ,,,TRUE,,Resource,,,,
Date Added,The date that the resource was originally added.,,,TRUE,,Resource,,,,
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