Hyperlink module name and file path in lint results

nf_core/components/lint/__init__.py

@@ -11,6 +11,7 @@
 import rich.box
 import rich.console
 import rich.panel
+import rich.repr
 from rich.markdown import Markdown
 from rich.table import Table
 
@@ -31,6 +32,7 @@ class LintExceptionError(Exception):
     pass
 
 
+@rich.repr.auto
 class LintResult:
     """An object to hold the results of a lint test"""
 
@@ -42,6 +44,7 @@ def __init__(self, component, lint_test, message, file_path):
         self.component_name = component.component_name
 
 
+@rich.repr.auto
 class ComponentLint(ComponentCommand):
     """
     An object for linting modules and subworkflows either in a clone of the 'nf-core/modules'
@@ -231,9 +234,20 @@ def format_result(test_results, table):
                 if last_modname and lint_result.component_name != last_modname:
                     even_row = not even_row
                 last_modname = lint_result.component_name
+
+                # If this is an nf-core module, link to the nf-core webpage
+                if lint_result.component.repo_url == "https://github.com/nf-core/modules.git":
+                    module_name = f"[link=https://nf-co.re/modules/{lint_result.component_name.replace("/","_")}]{lint_result.component_name}[/link]"
+                else:
+                    module_name = lint_result.component_name
+
+                # Make the filename clickable to open in VSCode
+                file_path = os.path.relpath(lint_result.file_path, self.dir)
+                file_path_link = f"[link=vscode://file/{os.path.abspath(file_path)}]{file_path}[/link]"
+
                 table.add_row(
-                    Markdown(f"{lint_result.component_name}"),
-                    os.path.relpath(lint_result.file_path, self.dir),
+                    module_name,
+                    file_path_link,
                     Markdown(f"{lint_result.message}"),
                     style="dim" if even_row else None,
                 )