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Add fallback to Download Pipeline Workflow #2846

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Mar 14, 2024
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Changelog.
MatthiasZepper committed Mar 13, 2024
commit 393fd15db14ade4958c1a7586a92b75c069f550c
1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -7,6 +7,7 @@
- Remove fasta default from nextflow.config ([#2828](https://github.com/nf-core/tools/pull/2828))
- Update templates to use nf-core/setup-nextflow v2
- Link to troubleshooting docs when pipeline fails ([#2845](https://github.com/nf-core/tools/pull/2845))
- Add fallback to `download_pipeline.yml` in case the pipeline does not support stub runs ([#2846](https://github.com/nf-core/tools/pull/2846))

### Linting

Original file line number Diff line number Diff line change
@@ -73,7 +73,7 @@ jobs:
NXF_SINGULARITY_CACHEDIR: ./
NXF_SINGULARITY_HOME_MOUNT: true
run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results
- name: Run the downloaded pipeline (Stub run not supported)
- name: Run the downloaded pipeline (stub run not supported)
id: run_pipeline
if: ${{ failure() && steps.stub_run_pipeline.conclusion == 'failure' }}
env: