switch to setup-nf-test

.github/workflows/pytest.yml

@@ -12,7 +12,9 @@ on:
     paths-ignore:
       - "docs/**"
       - "CHANGELOG.md"
+      # ignore github workflows except for the current one
       - ".github/**"
+      - "!.github/workflows/pytest.yml"
   release:
     types: [published]
   workflow_dispatch:
@@ -121,30 +123,8 @@ jobs:
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
 
-      - name: Look if nf-test is already installed and write to env variable
-        id: check-nftest
-        run: |
-          if [ -f /usr/local/bin/nf-test ]; then
-            echo "nftest_installed=true" >> $GITHUB_ENV
-          else
-            echo "nftest_installed=false" >> $GITHUB_ENV
-          fi
-
-      - name: Cache nf-test installation
-        if: env.nftest_installed != 'true'
-        id: cache-software
-        uses: actions/cache@ab5e6d0c87105b4c9c2047343972218f562e4319 # v4
-        with:
-          path: |
-            /usr/local/bin/nf-test
-            /home/runner/.nf-test/nf-test.jar
-          key: ${{ runner.os }}-nftest-${{ env.date }}
-
       - name: Install nf-test
-        if: steps.cache-software.outputs.cache-hit != 'true' && env.nftest_installed != 'true'
-        run: |
-          wget -qO- https://code.askimed.com/install/nf-test | bash
-          sudo mv nf-test /usr/local/bin/
+        uses: nf-core/setup-nf-test@v1
 
       - name: move coveragerc file up
         run: |

.github/workflows/rich-codex.yml

@@ -17,20 +17,8 @@ jobs:
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
 
-      - name: Cache nf-test installation
-        id: cache-software
-        uses: actions/cache@ab5e6d0c87105b4c9c2047343972218f562e4319 # v4
-        with:
-          path: |
-            /usr/local/bin/nf-test
-            /home/runner/.nf-test/nf-test.jar
-          key: ${{ runner.os }}-nftest-${{ env.date }}
-
       - name: Install nf-test
-        if: steps.cache-software.outputs.cache-hit != 'true'
-        run: |
-          wget -qO- https://code.askimed.com/install/nf-test | bash
-          sudo mv nf-test /usr/local/bin/
+        uses: nf-core/setup-nf-test@v1
 
       - name: Install nf-core/tools
         run: pip install git+https://github.com/nf-core/tools.git@dev

CHANGELOG.md

@@ -14,8 +14,9 @@
 
 - Update CI to use nf-core/setup-nextflow v2
 - Changelog bot: handle also patch version before dev suffix ([#2820](https://github.com/nf-core/tools/pull/2820))
-- update prettier to 3.2.5 ([#2830](https://github.com/nf-core/tools/pull/2830))
+- Update prettier to 3.2.5 ([#2830](https://github.com/nf-core/tools/pull/2830))
 - Update GitHub Actions ([#2827](https://github.com/nf-core/tools/pull/2827))
+- Switch to setup-nf-test ([#2834](https://github.com/nf-core/tools/pull/2834))
 - Update pre-commit hook astral-sh/ruff-pre-commit to v0.3.2 ([#2836](https://github.com/nf-core/tools/pull/2836))
 
 ## [v2.13.1 - Tin Puppy Patch](https://github.com/nf-core/tools/releases/tag/2.13) - [2024-02-29]