Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Modules: Add --profile parameter to nf-test command #2767

Merged
merged 7 commits into from
Feb 19, 2024
+27 −5
Merged

Modules: Add --profile parameter to nf-test command #2767

Changes from 1 commit
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
d9f8443
add profile parameter to nf-test command
mashehu Feb 16, 2024
bb7e638
[automated] Update CHANGELOG.md
nf-core-bot Feb 16, 2024
fba4272
fix tests
mashehu Feb 16, 2024
58b6712
Merge branch 'nf-test-profiles' of github.com:mashehu/tools into nf-t…
mashehu Feb 16, 2024
6a7980d
fix all occurences
mashehu Feb 16, 2024
75f6f19
remove options
mashehu Feb 16, 2024
f4a4c2f
no need for a prompt if it profile is set as a parameter
mashehu Feb 19, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Loading
Loading status checks…
fix all occurences
@mashehu
mashehu committed Feb 16, 2024
commit 6a7980d65537e5d9fde90adb3dc891de2fce2e3f
2 changes: 1 addition & 1 deletion nf_core/__main__.py
View file
Original file line number Diff line number Diff line change
@@ -1407,7 +1407,7 @@ def create_subworkflow(ctx, subworkflow, dir, author, force, migrate_pytest):
)
@click.option(
"--profile",
type=str,
type=click.Choice(["none", "singularity"]),
default=None,
help="Run tests with a specific profile",
options=["docker", "singularity", "conda"],