Code

Dev -> Master for 2.12.1#2718

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Merged

mashehu merged 63 commits intomasternf-core/tools:masterfrom devnf-core/tools:devCopy head branch name to clipboardFeb 1, 2024

+2,307-2,079

Commits

Commits on Jan 29, 2024

• Pin dependencies

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• bump to 2.13dev

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• Update CHANGELOG.md

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• Merge pull request #2702 from mirpedrol/bump-2.13dev

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• Merge branch 'dev' into renovate/pin-dependencies

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• handle default read as float when type is number

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• Update pre-commit hook astral-sh/ruff-pre-commit to v0.1.15

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• [automated] Update CHANGELOG.md

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Commits on Jan 30, 2024

• Merge pull request #2705 from nf-core/renovate/astral-sh-ruff-pre-commit-0.x

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• Merge branch 'dev' into linting-defaults

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• [automated] Update CHANGELOG.md

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• Merge pull request #2703 from mirpedrol/linting-defaults

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• Merge branch 'dev' into renovate/pin-dependencies

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• Merge pull request #2701 from nf-core/renovate/pin-dependencies

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• fix ignoring files_unchanged

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• [automated] Update CHANGELOG.md

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• fix changelog titles

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• [automated] Update CHANGELOG.md

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• fix types in files_unchanged

  mashehu

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• fix typing in files_exist

  mashehu

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• Merge pull request #2 from mashehu/files-unchanged

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• avoid circular import

  mashehu

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• fix linting

  mashehu

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• fix plugin entry

  mashehu

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• fix plugin entry

  mashehu

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• Update nf_core/lint/files_exist.py

  mirpedrol

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• Merge pull request #2708 from mirpedrol/changelog-titles

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Commits on Jan 31, 2024

• Merge branch 'files-unchanged' of github.com:mirpedrol/tools into files-unchanged

  mashehu

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• fix paths, ignored listing and remove debugging

  mashehu

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• print relative path not absolute path in logo cmd

  mashehu

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• remove rich debugs logs from verbose mode

  mashehu

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• handle relative paths more gracefully

  mashehu

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• [automated] Update CHANGELOG.md

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• fix types

  mashehu

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• fix reporting of ignored conditional files

  mashehu

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• rescue removed ignore statement by logging it directly

  mashehu

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• actually don't need conditional in files unchanged if they are not anymore in the template

  mashehu

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• add tests for conditionals

  mashehu

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• Update tests/test_lint.py

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• Merge pull request #2709 from mashehu/output-path-for-logo

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• fix linting

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• Merge pull request #2707 from mirpedrol/files-unchanged

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• handle float values in default value comparison

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• use type based file default value comparison

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• [automated] Update CHANGELOG.md

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• Merge branch 'dev' into type-schema

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• Update codecov/codecov-action action to v4

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• [automated] Update CHANGELOG.md

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Commits on Feb 1, 2024

• Merge pull request #2713 from nf-core/renovate/codecov-codecov-action-4.x

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• let renovate ignore nf-core-bot

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• [automated] Update CHANGELOG.md

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• Merge pull request #2716 from mashehu/ignore-nf-core-bot-in-renovate

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• Update tests/lint/nextflow_config.py

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• fix schema tests

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• Merge pull request #2712 from mashehu/type-schema

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• bump to 2.12.1

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• Merge pull request #2717 from mashehu/bump-version

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• Revert "Pin dependencies"

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• [automated] Update CHANGELOG.md

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• Merge branch 'dev' into revert-dep-pin

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• update CHANGELOG

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• Merge pull request #2719 from mashehu/revert-dep-pin

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• Generate new screengrabs with rich-codex

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