Add failed lint condition when params.enable_conda is in a module

nf_core/modules/lint/main_nf.py

@@ -257,9 +257,15 @@ def check_process_section(self, lines, fix_version, progress_bar):
         self.warned.append(("process_standard_label", "Process label unspecified", self.main_nf))
     for i, l in enumerate(lines):
         url = None
+        l = l.strip(" '\"")
         if _container_type(l) == "bioconda":
             bioconda_packages = [b for b in l.split() if "bioconda::" in b]
-        l = l.strip(" '\"")
+        if _container_type(l) == "bioconda" or _container_type(l) == "conda":
+            match = re.search(r"params\.enable_conda",l)
+            if match is None:
+                self.passed.append(("deprecated_enable_conda", f"Found deprecated parameter 'params.enable_conda' in the conda definition", self.main_nf))
+            else:
+                self.failed.append(("deprecated_enable_conda", f"Deprecated parameter 'params.enable_conda' correctly not found in the conda definition", self.main_nf))
         if _container_type(l) == "singularity":
             # e.g. "https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv1/biocontainers_v1.2.0_cv1.img' :" -> v1.2.0_cv1
             # e.g. "https://depot.galaxyproject.org/singularity/fastqc:0.11.9--0' :" -> 0.11.9--0
@@ -518,6 +524,8 @@ def _container_type(line):
     """Returns the container type of a build."""
     if re.search("bioconda::", line):
         return "bioconda"
+    if line.startswith("conda"):
+        return "conda"
     if line.startswith("https://containers") or line.startswith("https://depot"):
         # Look for a http download URL.
         # Thanks Stack Overflow for the regex: https://stackoverflow.com/a/3809435/713980