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Fix #1275 #1278

Merged
merged 6 commits into from
Sep 30, 2021
Merged

Fix #1275 #1278

merged 6 commits into from
Sep 30, 2021

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drpatelh
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Get tests passing again after changing the way we report software versions from each module.

@drpatelh drpatelh marked this pull request as draft September 29, 2021 12:29
@drpatelh drpatelh marked this pull request as ready for review September 29, 2021 15:51
@drpatelh drpatelh requested a review from grst September 29, 2021 16:08
@@ -54,4 +54,7 @@ process {
errorStrategy = 'retry'
maxRetries = 2
}
withName:CUSTOM_DUMPSOFTWAREVERSIONS {
cache = false
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Why is this necessary? (I know it was like that before, but i never understood why)

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So MultiQC is always re-run regardless of whether the pipeline is cached or not.

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I think there were issues around it not being re-run properly when it had to be but not 💯

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codecov bot commented Sep 29, 2021

Codecov Report

Merging #1278 (2485384) into dev (5053402) will decrease coverage by 0.05%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##              dev    #1278      +/-   ##
==========================================
- Coverage   67.55%   67.50%   -0.06%     
==========================================
  Files          50       50              
  Lines        5607     5607              
==========================================
- Hits         3788     3785       -3     
- Misses       1819     1822       +3     
Impacted Files Coverage Δ
nf_core/lint/files_exist.py 81.81% <ø> (ø)
nf_core/modules/lint/module_version.py 80.76% <0.00%> (-3.85%) ⬇️
nf_core/modules/lint/__init__.py 82.79% <0.00%> (-1.40%) ⬇️
nf_core/modules/lint/main_nf.py 84.82% <0.00%> (-1.38%) ⬇️
nf_core/utils.py 84.21% <0.00%> (-0.26%) ⬇️
nf_core/modules/modules_command.py 57.86% <0.00%> (+2.03%) ⬆️

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@drpatelh drpatelh requested a review from grst September 30, 2021 08:03
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LGTM!

@drpatelh drpatelh merged commit 9a8572b into nf-core:dev Sep 30, 2021
@drpatelh drpatelh deleted the dsl2 branch October 1, 2021 13:15
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2 participants