Merge branch 'dev' into renovate/pin-dependencies

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.14
+    rev: v0.1.15
     hooks:
       - id: ruff # linter
         args: [--fix, --exit-non-zero-on-fix] # sort imports and fix

CHANGELOG.md

@@ -6,12 +6,16 @@
 
 ### Linting
 
+- Handle default values of type number from nextflow schema ([#2703](https://github.com/nf-core/tools/pull/2703))
+
 ### Modules
 
 ### Subworkflows
 
 ### General
 
+- Update pre-commit hook astral-sh/ruff-pre-commit to v0.1.15 ([#2705](https://github.com/nf-core/tools/pull/2705))
+
 # [v2.12 - Aluminium Wolf](https://github.com/nf-core/tools/releases/tag/2.11) - [2024-01-29]
 
 ### Template

nf_core/lint/nextflow_config.py

@@ -390,9 +390,13 @@ def nextflow_config(self):
             if str(self.nf_config[param]) == schema_default:
                 passed.append(f"Config default value correct: {param}")
             else:
-                failed.append(
-                    f"Config default value incorrect: `{param}` is set as {self._wrap_quotes(schema_default)} in `nextflow_schema.json` but is {self._wrap_quotes(self.nf_config[param])} in `nextflow.config`."
-                )
+                # Handle "number" type
+                if schema_default.endswith(".0") and str(self.nf_config[param]) == schema_default[:-2]:
+                    passed.append(f"Config default value correct: {param}")
+                else:
+                    failed.append(
+                        f"Config default value incorrect: `{param}` is set as {self._wrap_quotes(schema_default)} in `nextflow_schema.json` but is {self._wrap_quotes(self.nf_config[param])} in `nextflow.config`."
+                    )
         else:
             failed.append(
                 f"Default value from the Nextflow schema '{param} = {self._wrap_quotes(schema_default)}' not found in `nextflow.config`."