Merge pull request #2785 from maxulysse/template_update

Templates: update Nextflow Tower -> Seqera Platform badge and keep some newlines in local subworkflow
nf-core · Feb 21, 2024 · ec13bfd · ec13bfd
2 parents df699d1 + 984b120
commit ec13bfd
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diff --git a/nf_core/pipeline-template/README.md b/nf_core/pipeline-template/README.md
@@ -14,12 +14,13 @@
 {% if branded -%}[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/{{ short_name }}/results){% endif -%}
 {%- if github_badges -%}
 [![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
 [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
 [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
-[![Launch on Nextflow Tower](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Nextflow%20Tower-%234256e7)](https://tower.nf/launch?pipeline=https://github.com/{{ name }})
+[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://tower.nf/launch?pipeline=https://github.com/{{ name }})
 
 {% endif -%}
 {%- if branded -%}[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23{{ short_name }}-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/{{ short_name }}){% endif -%}

diff --git a/nf_core/pipeline-template/subworkflows/local/utils_nfcore_pipeline_pipeline/main.nf b/nf_core/pipeline-template/subworkflows/local/utils_nfcore_pipeline_pipeline/main.nf
@@ -1,5 +1,5 @@
 //
-// Subworkflow with functionality specific to the nf-core/pipeline pipeline
+// Subworkflow with functionality specific to the {{ name }} pipeline
 //
 
 /*
@@ -158,7 +158,7 @@ workflow PIPELINE_COMPLETION {
 def validateInputParameters() {
     genomeExistsError()
 }
-{%- endif -%}
+{%- endif %}
 
 //
 // Validate channels from input samplesheet
@@ -201,7 +201,7 @@ def genomeExistsError() {
         error(error_string)
     }
 }
-{%- endif -%}
+{%- endif %}
 
 //
 // Generate methods description for MultiQC