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Pin anndataR to v0.1.0 #472

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4 changes: 2 additions & 2 deletions modules/local/templates/anndatar_convert.R
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Expand Up @@ -11,14 +11,14 @@ library(SingleCellExperiment)
adata <- read_h5ad("${h5ad}")

# convert to Seurat
obj <- adata\$to_Seurat()
obj <- adata\$as_Seurat()

# save files
dir.create(file.path("$meta.id"), showWarnings = FALSE)
saveRDS(obj, file = "${meta.id}_${meta.input_type}_matrix.seurat.rds")

# convert to SingleCellExperiment
obj <- adata\$to_SingleCellExperiment()
obj <- adata\$as_SingleCellExperiment()

# save files
dir.create(file.path("$meta.id"), showWarnings = FALSE)
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