Skip to content

nf-core/scnanoseq v1.1.0 - Iron Alligator

Latest
Latest
Compare
Choose a tag to compare
@atrull314 atrull314 released this 18 Mar 17:39
1.1.0
500954e
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

Enhancements

  • Inputs for IsoQuant are split on chromosome to allow for faster processing
  • The read counts QC metric is now able to leverage NanoPlot counts if FastQC is skipped
  • Added oarfish as an option for quantification
  • Added picard markdupes as an option for deduplication

Fixes

  • The 'Post Trim Read QC' and 'Post Extract Read QC' nodes on the metro diagram have been placed in correct locations (closes issue #36)
  • The BLAZE process in the example config has been corrected to use cpus instead of --threads

Software dependencies

Dependency Old version New version
IsoQuant 3.5.0 3.6.1
MultiQC 1.25 1.25.1
Assets 2
Loading