Code

Tower actions testing#981

Code

Merged

drpatelh merged 26 commits intodevnf-core/rnaseq:devfrom tower-actions-testingnf-core/rnaseq:tower-actions-testingCopy head branch name to clipboardMar 29, 2023

+223-43

Commits

Commits on Mar 28, 2023

• First pass at a GitHub Actions workflow for Tower

  robsyme

  committed
  0fb0648

  Copy full SHA for 0fb0648

Commits on Mar 29, 2023

• Use add-wait branch of tower action

  robsyme

  committed
  ce0bb67

  Copy full SHA for ce0bb67

• Remove if statements

  robsyme

  committed
  8813318

  Copy full SHA for 8813318

• Add full-sized cloud tests

  robsyme

  committed
  4c07497

  Copy full SHA for 4c07497

• Trailing commas are not allowed in YAML files.

  Show description for c513d27
  robsyme

  committed
  c513d27

  Copy full SHA for c513d27

• Unset igenomes_base from small test workflow

  robsyme

  committed
  bf8c05a

  Copy full SHA for bf8c05a

• Apply suggestions from code review

  drpatelh

  authored
  a759554

  Copy full SHA for a759554

• Move to self-hosted runners

  robsyme

  committed
  d21abe6

  Copy full SHA for d21abe6

• Add matrix

  robsyme

  committed
  56bf2ed

  Copy full SHA for 56bf2ed

• Change to self-hosted runners

  robsyme

  committed
  053d16e

  Copy full SHA for 053d16e

• Include aligner in run names

  robsyme

  committed
  7399f56

  Copy full SHA for 7399f56

• Update work directory to match old runners

  robsyme

  committed
  22db014

  Copy full SHA for 22db014

• Use env for run name

  robsyme

  committed
  3ee41ab

  Copy full SHA for 3ee41ab

• Remove github.event.pull_request.head.label

  robsyme

  committed
  29cf6ab

  Copy full SHA for 29cf6ab

• Rely on action to remove colons from branch name

  robsyme

  committed
  79c354f

  Copy full SHA for 79c354f

• Remove double underscore

  robsyme

  committed
  8fab0d9

  Copy full SHA for 8fab0d9

• Bump actions versions

  robsyme

  committed
  1a88aa8

  Copy full SHA for 1a88aa8

• Minimize run names to remove tag/branch/commit

  robsyme

  committed
  7957933

  Copy full SHA for 7957933

• Fix #975

  

  drpatelh

  authored and

  robsyme

  committed
  bb41bbc

  Copy full SHA for bb41bbc

• Replace System.exit(1) calls in pipeline template

  

  drpatelh

  authored and

  robsyme

  committed
  baa7aa3

  Copy full SHA for baa7aa3

• Fix nf-core lint

  

  drpatelh

  authored and

  robsyme

  committed
  7b8abfc

  Copy full SHA for 7b8abfc

• Add explicit test_full profiles for all cloud providers

  

  drpatelh

  authored and

  robsyme

  committed
  aa407f4

  Copy full SHA for aa407f4

• Update nextflow.config

  

  drpatelh

  authored and

  robsyme

  committed
  565e970

  Copy full SHA for 565e970

• Update nextflow.config

  

  drpatelh

  authored and

  robsyme

  committed
  257fd7e

  Copy full SHA for 257fd7e

• Update nextflow.config

  

  drpatelh

  authored and

  robsyme

  committed
  530c813

  Copy full SHA for 530c813

• Minor fixes for JSON sent to Slack.

  Show description for fe39f59
  robsyme

  committed
  fe39f59

  Copy full SHA for fe39f59