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1.3.0dev -> 1.3.0 #407

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1.3.0dev -> 1.3.0

1.3.0dev -> 1.3.0 #407

Triggered via pull request April 8, 2024 12:17
@ypriverolypriverol
opened #148
bigbio:dev
Status Failure
Total duration 1h 4m 56s
Artifacts 8

ci.yml

on: pull_request
Matrix: Run pipeline with test data
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2 errors and 12 warnings
Run pipeline with test data (23.04.0, test_tmt, conda)
Read-only file system : '/home/runner/runners/2.315.0/_diag/pages/81a4f192-2766-4645-b7a2-de924e480667_4726263f-f70c-5353-db51-f70bbaada7a7_1.log'
Run pipeline with test data (23.04.0, test_tmt, conda)
System.IO.IOException: Read-only file system : '/home/runner/runners/2.315.0/_diag/pages/81a4f192-2766-4645-b7a2-de924e480667_b33f7769-528a-4519-b584-f8eaf912daf7_2.log' at Interop.ThrowExceptionForIoErrno(ErrorInfo errorInfo, String path, Boolean isDirectory, Func`2 errorRewriter) at Interop.CheckIo(Error error, String path, Boolean isDirectory, Func`2 errorRewriter) at Microsoft.Win32.SafeHandles.SafeFileHandle.Open(String path, OpenFlags flags, Int32 mode) at Microsoft.Win32.SafeHandles.SafeFileHandle.Open(String fullPath, FileMode mode, FileAccess access, FileShare share, FileOptions options, Int64 preallocationSize) at System.IO.Strategies.OSFileStreamStrategy..ctor(String path, FileMode mode, FileAccess access, FileShare share, FileOptions options, Int64 preallocationSize) at System.IO.Strategies.FileStreamHelpers.ChooseStrategy(FileStream fileStream, String path, FileMode mode, FileAccess access, FileShare share, Int32 bufferSize, FileOptions options, Int64 preallocationSize) at System.IO.FileStream..ctor(String path, FileMode mode, FileAccess access, FileShare share) at GitHub.Runner.Common.PagingLogger.NewPage() at GitHub.Runner.Common.PagingLogger.Write(String message) at GitHub.Runner.Worker.ExecutionContext.Write(String tag, String message) at GitHub.Runner.Worker.ExecutionContextExtension.Output(IExecutionContext context, String message) at GitHub.Runner.Worker.JobExtension.FinalizeJob(IExecutionContext jobContext, AgentJobRequestMessage message, DateTime jobStartTimeUtc) at GitHub.Runner.Worker.JobRunner.RunAsync(AgentJobRequestMessage message, CancellationToken jobRequestCancellationToken) at GitHub.Runner.Worker.JobRunner.RunAsync(AgentJobRequestMessage message, CancellationToken jobRequestCancellationToken) at GitHub.Runner.Worker.Worker.RunAsync(String pipeIn, String pipeOut) at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
Run pipeline with test data (23.04.0, test_lfq_sage, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything, test_lfq, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, test_lfq, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, test_lfq_sage, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything, test_lfq_sage, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, test_lfq, conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything, test_localize, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything, test_tmt, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, test_localize, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, test_tmt, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything, test_dia, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, test_dia, docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
nextflow.log Expired
142 KB
test_dia_docker_results Expired
6.82 GB
test_lfq_conda_results Expired
69.8 MB
test_lfq_docker_results Expired
73 MB
test_lfq_sage_conda_results Expired
69.6 MB
test_lfq_sage_docker_results Expired
69.5 MB
test_localize_docker_results Expired
195 MB
test_tmt_docker_results Expired
204 MB